Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 8.6e-182 640.2 322 100.0
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.8e-178 626.7 322 97.8
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.3e-149 531.9 322 85.4
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 9.0e-147 523.9 322 80.4
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 5.4e-144 514.6 322 79.8
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.4e-144 514.6 322 78.6
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.7e-142 509.6 321 77.6
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.7e-142 507.3 322 77.3
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 3.0e-134 482.3 325 73.8
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 9.6e-133 477.2 321 72.9
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.1e-132 476.1 321 72.3
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.1e-131 473.8 321 71.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.4e-131 472.6 326 69.3
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 5.3e-131 471.5 321 70.7
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 5.3e-131 471.5 322 70.2
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 3.4e-130 468.8 321 69.5
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 7.6e-130 467.6 324 69.4
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.3e-129 466.8 319 70.2
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.3e-129 466.8 323 70.3
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 2.9e-129 465.7 321 69.5
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 4.9e-129 464.9 321 70.7
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 6.5e-129 464.5 323 70.3
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.9e-128 463.0 321 68.5
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.5e-128 462.6 323 69.0
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.2e-127 460.3 331 67.7
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 6.0e-127 458.0 323 69.0
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 6.0e-127 458.0 321 69.2
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 7.9e-127 457.6 321 68.5
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.0e-126 457.2 321 68.5
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 3.9e-126 455.3 320 71.6
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 5.1e-126 454.9 323 68.4
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 6.7e-126 454.5 321 68.5
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 8.7e-126 454.1 321 67.9
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 8.7e-126 454.1 319 68.3
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.1e-125 453.8 321 66.7
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 2.5e-125 452.6 321 67.9
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.3e-125 451.8 323 69.7
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.3e-125 451.8 322 66.8
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 5.7e-125 451.4 321 67.6
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 7.4e-125 451.1 323 67.5
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 7.4e-125 451.1 321 68.2
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 9.6e-125 450.7 321 66.0
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.7e-124 448.7 322 67.1
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 6.3e-124 448.0 321 68.2
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.8e-123 446.4 321 66.7
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.8e-123 446.4 321 66.7
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.4e-123 446.0 325 66.8
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.4e-123 446.0 319 66.8
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 3.1e-123 445.7 321 66.7
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 4.1e-123 445.3 323 66.6
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 6.9e-123 444.5 325 65.5
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 9.0e-123 444.1 323 65.3
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.0e-122 443.0 325 66.2
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 3.4e-122 442.2 320 65.9
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.0e-121 440.7 326 65.3
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.3e-121 440.3 325 64.6
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.3e-121 440.3 325 64.9
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.7e-121 439.9 325 66.2
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 2.9e-121 439.1 368 61.4
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 5.0e-121 438.3 323 65.6
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 4.2e-120 435.3 317 65.0
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 4.2e-120 435.3 323 65.0
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 7.2e-120 434.5 317 65.3
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 6.1e-119 431.4 324 64.8
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 7.9e-119 431.0 324 64.2
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.9e-119 431.0 324 64.2
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.0e-118 430.6 321 64.8
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.3e-118 430.3 318 64.5
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.8e-118 429.9 320 65.0
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.8e-118 429.9 324 64.2
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 5.1e-118 428.3 306 66.7
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 8.2e-116 421.0 322 64.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.1e-115 419.1 323 63.2
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 9.0e-115 417.5 323 62.8
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.2e-114 417.2 321 63.9
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 1.5e-114 416.8 322 62.4
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.5e-114 416.8 321 63.9
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.2e-113 412.9 325 63.7
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 6.5e-113 411.4 323 62.2
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.1e-112 410.6 324 62.3
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.1e-112 410.6 279 70.6
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.4e-112 410.2 324 61.7
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 3.2e-112 409.1 324 61.4
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 4.2e-112 408.7 324 60.8
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 7.2e-112 407.9 324 60.8
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 2.1e-111 406.4 323 63.2
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.7e-111 406.0 326 61.3
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 3.6e-111 405.6 323 60.7
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 4.6e-111 405.2 323 60.4
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 4.6e-111 405.2 324 60.2
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.6e-111 405.2 323 61.0
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 6.7e-110 401.4 324 59.0
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.1e-109 400.6 323 61.3
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 3.3e-109 399.1 325 60.0
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 3.3e-109 399.1 324 59.9
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 4.3e-109 398.7 303 64.0
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.3e-109 398.7 324 61.1
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.7e-108 396.7 264 72.7
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 3.7e-108 395.6 325 59.1
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 1.4e-107 393.7 326 59.5
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.8e-107 393.3 323 60.4
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 6.9e-107 391.3 325 58.8
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.2e-106 390.6 326 59.2
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.3e-105 387.1 318 60.1
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.7e-105 386.7 305 61.3
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 8.5e-105 384.4 323 59.8
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.6e-103 380.2 285 66.3
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.6e-103 379.0 372 54.6
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.5e-101 373.6 294 63.6
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.0e-101 373.2 414 50.7
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.0e-98 363.2 324 56.2
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 2.9e-97 359.4 324 55.6
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 3.2e-96 355.9 251 67.7
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-93 347.4 286 60.5
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.8e-92 342.8 322 54.3
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.8e-91 340.1 322 54.3
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.0e-91 338.2 321 55.5
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 2.5e-88 329.7 541 37.7
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 3.6e-87 325.9 263 59.7
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 6.8e-86 321.6 267 59.9
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.3e-84 317.4 683 32.1
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 3.7e-84 315.8 220 67.7
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.5e-77 293.9 235 60.4
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.4e-77 292.4 310 46.5
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 9.8e-77 291.2 310 46.5
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.8e-76 289.7 255 57.6
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 6.3e-76 288.5 305 48.2
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 8.6e-73 278.1 202 67.3
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 9.5e-72 274.6 309 46.6
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 7.8e-66 255.0 177 68.4
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 7.3e-64 248.4 221 56.1
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 2.7e-50 203.4 299 36.1
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 9.2e-43 178.3 191 46.1
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.4e-36 155.6 94 75.5
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.1e-35 154.8 94 75.5
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 9.3e-35 151.8 96 74.0
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 2.0e-29 134.0 99 63.6
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 9.3e-27 125.2 75 72.0
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 6.0e-26 122.5 99 60.6
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 8.7e-25 118.6 119 52.9
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.1e-23 114.0 86 65.1
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 9.9e-21 105.1 332 25.0
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.2e-18 98.2 81 56.8
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 2.1e-18 97.4 88 56.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 3.4e-13 80.1 63 60.3
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.5e-10 70.1 43 83.7
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.1e-08 65.1 54 61.1
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.1e-08 65.1 54 61.1
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-08 64.7 54 61.1
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.7e-07 60.1 55 52.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 4.8e-07 59.7 66 45.5
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 5.3e-06 56.2 69 42.0


User provided reference genes

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