Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.0e-145 518.1 264 100.0
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.9e-141 503.8 264 97.0
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.4e-129 466.5 265 89.4
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.5e-128 463.0 264 89.0
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 4.5e-128 461.5 265 87.9
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.3e-127 459.9 265 88.7
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 4.2e-126 454.9 266 87.2
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.8e-122 441.4 264 85.2
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 4.8e-122 441.4 267 84.3
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 8.2e-122 440.7 265 84.5
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.1e-121 440.3 264 84.8
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.8e-121 439.5 265 83.4
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 3.1e-121 438.7 267 82.4
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 4.1e-121 438.3 267 83.9
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.2e-120 436.8 267 83.5
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 2.6e-120 435.6 266 82.7
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 3.4e-120 435.3 268 84.0
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 4.5e-120 434.9 267 82.4
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.9e-120 434.5 224 98.2
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.2e-119 432.6 267 83.9
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.9e-119 432.2 265 83.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 5.0e-119 431.4 267 81.6
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.5e-119 431.0 264 83.7
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.1e-118 430.3 267 81.6
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-118 429.5 266 82.0
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.9e-118 429.5 267 81.6
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 3.2e-118 428.7 266 81.6
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.7e-117 425.6 267 80.1
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.7e-117 425.6 265 81.9
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.8e-116 422.9 267 80.9
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.3e-116 422.5 267 79.8
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.3e-116 422.5 267 80.5
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 3.9e-116 421.8 267 80.1
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.1e-115 420.2 264 81.4
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.5e-115 419.1 267 82.0
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 4.3e-115 418.3 273 80.2
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 5.7e-115 417.9 259 80.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.4e-115 417.5 266 80.8
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 9.7e-115 417.2 268 80.6
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.8e-114 415.6 267 78.7
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 2.8e-114 415.6 267 79.0
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.8e-114 415.6 266 78.6
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.8e-114 415.6 263 79.8
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.8e-114 415.6 263 80.6
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 4.8e-114 414.8 274 79.2
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 8.2e-114 414.1 268 79.9
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-113 413.7 267 79.8
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-113 413.7 267 79.8
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.1e-113 413.7 264 78.8
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.1e-113 413.7 259 80.3
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.4e-113 413.3 267 79.8
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.4e-113 413.3 267 79.8
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.4e-113 413.3 267 78.7
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.8e-113 412.9 267 80.1
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.8e-113 412.9 262 80.2
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.1e-113 412.1 262 80.5
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 4.1e-113 411.8 267 78.7
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 4.1e-113 411.8 265 79.6
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 6.9e-113 411.0 267 77.9
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 9.1e-113 410.6 269 78.1
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.2e-112 410.2 265 78.9
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-112 410.2 270 79.3
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.5e-112 409.8 267 79.4
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.0e-112 409.5 264 78.0
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 2.0e-112 409.5 267 80.9
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 4.5e-112 408.3 263 78.7
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.7e-111 406.4 264 77.7
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 2.9e-111 405.6 264 77.7
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 8.5e-111 404.1 259 79.2
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-110 402.9 249 82.3
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 2.5e-110 402.5 315 69.2
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 7.2e-110 401.0 265 78.5
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 7.2e-110 401.0 268 77.6
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 9.4e-110 400.6 290 74.1
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.2e-109 400.2 253 81.0
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.2e-109 400.2 266 77.8
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-109 399.8 293 72.7
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.6e-109 399.8 267 76.8
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.0e-108 397.1 262 76.3
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.8e-108 396.4 262 76.3
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.8e-108 396.4 262 76.7
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.0e-107 392.9 255 78.8
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.3e-107 392.1 261 76.6
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 4.4e-107 391.7 262 75.6
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.7e-107 391.3 268 76.5
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 5.7e-107 391.3 268 76.5
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 9.7e-107 390.6 264 75.4
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 4.8e-106 388.3 308 69.2
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.8e-106 388.3 260 77.3
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.1e-105 385.6 251 77.3
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 7.0e-105 384.4 259 78.0
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.0e-105 384.4 250 77.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.0e-105 384.4 248 79.0
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 9.1e-105 384.0 265 75.1
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.6e-104 383.3 265 73.6
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.0e-104 382.9 265 74.0
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 2.6e-104 382.5 267 74.5
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.3e-103 380.2 254 75.6
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 3.8e-103 378.6 238 81.1
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.2e-102 375.6 285 71.9
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 5.5e-102 374.8 318 65.1
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 6.1e-101 371.3 258 75.2
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 8.0e-101 370.9 280 71.8
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.3e-100 369.4 265 72.1
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 3.0e-100 369.0 256 75.8
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 6.7e-100 367.9 250 77.6
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 6.7e-100 367.9 269 72.9
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 5.7e-99 364.8 269 71.0
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 9.7e-99 364.0 264 70.8
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.8e-98 362.5 268 70.9
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 4.8e-98 361.7 264 72.3
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.4e-97 360.1 261 73.2
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.4e-97 359.4 261 72.0
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.4e-97 359.4 257 72.4
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.4e-97 359.4 257 72.4
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 5.3e-97 358.2 261 72.4
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.0e-96 356.3 262 72.1
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.0e-96 356.3 275 72.0
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.3e-95 353.6 261 71.6
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.3e-95 353.6 262 71.4
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.3e-95 353.6 261 71.6
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.7e-95 353.2 261 70.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 3.8e-95 352.1 261 71.3
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 5.0e-95 351.7 261 71.3
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 8.5e-95 350.9 260 72.3
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.1e-94 350.5 261 71.3
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 3.2e-94 349.0 265 69.1
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.2e-94 348.6 260 72.3
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 9.4e-94 347.4 257 72.8
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.2e-93 347.1 263 70.7
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 6.1e-93 344.7 259 71.0
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 8.0e-93 344.4 268 69.0
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 2.3e-92 342.8 280 67.5
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 5.2e-92 341.7 261 69.7
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.4e-91 338.6 253 71.9
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 6.3e-90 334.7 259 69.9
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 8.3e-90 334.3 235 72.8
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 5.9e-88 328.2 261 67.8
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 8.5e-87 324.3 260 66.5
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 3.2e-86 322.4 264 66.3
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.2e-85 320.5 260 65.8
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 2.3e-84 316.2 264 66.3
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.2e-83 313.9 206 79.1
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.4e-83 312.0 264 65.5
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 6.3e-82 308.1 261 65.5
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.1e-81 305.8 240 71.2
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 4.1e-81 305.4 199 78.9
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 2.7e-80 302.8 260 63.5
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 8.6e-79 297.7 196 76.5
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.1e-70 270.8 190 74.2
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.3e-70 268.9 144 90.3
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.3e-62 242.7 174 72.4
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 6.6e-39 165.2 257 43.6
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 1.3e-37 161.0 184 49.5
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 1.4e-36 157.5 210 45.7
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 7.6e-35 151.8 244 39.8
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 2.9e-34 149.8 105 74.3
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.2e-32 144.4 121 66.9
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.6e-29 134.0 93 72.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.1e-29 133.7 74 91.9
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-28 128.3 160 46.9
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.4e-25 120.2 76 78.9
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.9e-18 96.7 117 43.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 4.9e-18 95.9 177 39.5
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.8e-15 87.4 92 54.3
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 3.7e-13 79.7 127 45.7
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.2e-11 74.7 41 75.6
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 5.0e-10 69.3 43 67.4
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 8.5e-10 68.6 41 70.7
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.5e-09 67.0 40 70.0
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 2.7e-08 63.5 141 34.0
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 2.5e-06 57.0 32 90.6


User provided reference genes

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