Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.9e-110 402.5 199 100.0
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.5e-109 398.3 199 99.0
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.1e-73 280.4 199 73.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 2.2e-71 272.7 203 69.0
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 2.2e-71 272.7 211 66.4
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.4e-67 257.7 211 64.9
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.7e-61 239.2 213 58.2
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 5.9e-56 221.5 213 55.9
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 5.9e-56 221.5 213 55.9
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 5.0e-55 218.4 207 55.6
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.2e-53 213.8 215 51.6
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 2.1e-53 213.0 202 55.4
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.1e-53 213.0 199 53.3
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.6e-53 212.2 213 52.6
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.8e-52 209.9 204 53.9
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 6.7e-52 208.0 207 55.1
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 1.5e-51 206.8 200 55.0
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 2.0e-51 206.5 206 53.9
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.3e-50 203.8 209 52.6
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.8e-50 201.8 217 49.3
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 8.2e-50 201.1 201 54.2
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.4e-49 200.3 205 52.7
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.8e-49 199.9 224 53.6
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 5.3e-49 198.4 220 47.3
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 5.3e-49 198.4 205 53.2
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.2e-48 197.2 212 53.8
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.0e-47 194.1 203 51.7
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 1.0e-47 194.1 197 50.8
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 1.0e-47 194.1 201 51.7
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 3.8e-47 192.2 209 47.8
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 5.0e-47 191.8 208 49.5
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 1.9e-46 189.9 178 54.5
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.5e-46 189.5 220 48.2
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 5.5e-46 188.3 221 50.7
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 4.7e-45 185.3 204 49.0
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 8.0e-45 184.5 199 50.3
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.0e-44 182.6 210 50.5
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 2.6e-43 179.5 127 63.8
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 3.3e-43 179.1 210 49.0
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 4.4e-43 178.7 205 49.8
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.4e-41 172.9 196 51.5
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 3.1e-41 172.6 224 48.2
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 3.1e-41 172.6 215 49.3
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 9.1e-41 171.0 214 47.7
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 9.1e-41 171.0 132 61.4
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.6e-40 170.2 199 45.2
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.6e-40 170.2 206 46.1
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.6e-40 170.2 192 47.9
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.0e-40 169.9 214 44.4
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.5e-40 169.1 202 48.0
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.5e-40 169.1 133 61.7
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 5.9e-40 168.3 199 49.2
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 1.0e-39 167.5 226 46.9
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.0e-39 167.5 129 59.7
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.7e-39 166.8 216 47.7
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 3.8e-39 165.6 226 45.1
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 6.5e-39 164.9 128 61.7
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 1.5e-38 163.7 190 50.0
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.9e-38 163.3 128 62.5
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 7.2e-38 161.4 128 58.6
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 9.4e-38 161.0 122 60.7
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 2.7e-37 159.5 199 46.2
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 4.7e-37 158.7 134 55.2
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.7e-37 158.7 219 46.6
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 4.7e-37 158.7 202 45.5
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 6.8e-36 154.8 199 43.7
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 6.8e-36 154.8 87 80.5
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.8e-36 154.5 251 39.4
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.8e-36 154.5 251 39.4
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.8e-36 154.5 115 64.3
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 8.8e-36 154.5 102 64.7
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 2.0e-35 153.3 203 41.9
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 4.4e-35 152.1 178 47.2
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 5.7e-35 151.8 131 58.0
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 7.5e-35 151.4 169 47.3
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 9.8e-35 151.0 169 47.9
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 9.8e-35 151.0 133 56.4
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 3.7e-34 149.1 99 64.6
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 8.3e-34 147.9 96 64.6
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.1e-33 147.5 125 56.8
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.1e-33 147.5 205 42.9
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.1e-33 147.5 205 42.9
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.8e-33 146.7 164 48.8
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 4.1e-33 145.6 198 46.5
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 5.4e-33 145.2 99 62.6
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 7.0e-33 144.8 132 54.5
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.2e-32 144.1 133 55.6
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.0e-32 143.3 132 53.0
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.7e-32 142.9 205 45.4
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 7.7e-32 141.4 128 54.7
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.3e-31 140.6 128 53.9
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.7e-31 140.2 130 55.4
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 1.7e-31 140.2 199 42.7
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.8e-31 139.0 130 54.6
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 3.8e-31 139.0 195 43.1
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.0e-31 138.7 132 53.0
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.5e-31 138.3 130 54.6
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 6.5e-31 138.3 133 53.4
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 6.5e-31 138.3 132 54.5
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.5e-31 137.9 132 53.8
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 8.5e-31 137.9 194 43.3
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-30 137.1 132 53.0
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 4.2e-30 135.6 175 48.0
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 5.5e-30 135.2 88 68.2
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-29 134.0 130 53.1
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 1.2e-29 134.0 202 40.6
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.0e-29 131.3 132 52.3
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.0e-28 131.0 203 41.4
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 4.0e-28 129.0 87 66.7
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 2.6e-27 126.3 201 40.8
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 4.4e-27 125.6 102 58.8
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 7.5e-27 124.8 173 39.9
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 7.5e-27 124.8 131 45.8
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 9.8e-27 124.4 136 49.3
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 1.7e-26 123.6 236 36.9
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.7e-26 123.6 209 38.8
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.1e-25 120.9 134 49.3
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.0e-24 116.7 219 39.3
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 2.7e-24 116.3 89 62.9
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.5e-24 115.9 210 36.7
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 3.5e-24 115.9 195 36.9
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 1.3e-23 114.0 84 64.3
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.3e-23 114.0 84 64.3
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.3e-23 114.0 84 64.3
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 1.3e-23 114.0 87 62.1
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-22 110.9 125 48.8
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.1e-22 110.9 125 48.8
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.5e-22 109.8 90 60.0
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 4.3e-22 109.0 128 51.6
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 5.6e-22 108.6 84 60.7
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 5.6e-22 108.6 135 46.7
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 5.6e-22 108.6 135 46.7
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 5.6e-22 108.6 84 60.7
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 7.3e-22 108.2 84 59.5
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 7.3e-22 108.2 208 38.0
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 9.5e-22 107.8 136 47.8
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 3.6e-21 105.9 136 45.6
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 3.6e-21 105.9 136 45.6
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 6.1e-21 105.1 136 44.9
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.3e-20 103.2 135 45.9
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 5.2e-20 102.1 135 41.5
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 5.2e-20 102.1 135 41.5
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 2.0e-19 100.1 138 42.0
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 2.0e-19 100.1 138 42.0
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.4e-19 99.0 138 42.8
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 6.4e-18 95.1 89 51.7
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 8.3e-18 94.7 89 51.7
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 8.3e-18 94.7 89 51.7
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 4.1e-17 92.4 63 65.1
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.6e-16 90.5 91 42.9
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 2.7e-16 89.7 89 49.4
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.7e-15 87.0 129 42.6
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 2.3e-15 86.7 202 35.1
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 3.0e-15 86.3 72 56.9
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.0e-15 85.5 55 67.3
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 5.0e-15 85.5 100 45.0
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 3.3e-14 82.8 119 42.0
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 4.3e-14 82.4 201 35.3
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 3.6e-13 79.3 133 39.8
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 1.1e-12 77.8 207 33.8
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 1.4e-12 77.4 200 33.5
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 1.8e-12 77.0 203 34.0
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 3.1e-12 76.3 213 31.9
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 4.0e-12 75.9 125 40.0
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 6.8e-12 75.1 135 37.8
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 8.9e-12 74.7 132 38.6
PSO782G3492 Papaver somniferum HOM05D004407 ORTHO05D005074 1.5e-11 73.9 142 37.3
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 4.4e-11 72.4 129 37.2
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 1.3e-10 70.9 117 41.0
Nitab4.5_0005414g0060 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.7e-10 70.5 132 35.6
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.2e-10 70.1 130 37.7
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 2.2e-10 70.1 53 64.2
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.4e-09 67.4 125 37.6
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 1.4e-09 67.4 216 31.0
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 1.4e-09 67.4 216 31.0
BolC7t44160H Brassica oleracea HOM05D013829 ORTHO05D015952 4.1e-09 65.9 205 31.2
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 9.2e-09 64.7 114 36.8
Carub.0006s3296 Capsella rubella HOM05D004407 ORTHO05D005074 3.0e-07 59.7 134 35.8
Aqoxy5G03598 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.1e-06 57.8 77 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3156 Anthoceros agrestis HOM05D018410 ORTHO05D021325 2.5e-06 56.6 60 40.0
Os01g0510200 Oryza sativa ssp. japonica HOM05D048835 ORTHO05D049595 3.3e-06 56.2 101 43.6


User provided reference genes

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