Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 1.1e-101 374.8 181 100.0
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 7.2e-98 362.1 180 97.8
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 1.4e-80 304.7 181 85.6
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 2.8e-73 280.4 184 76.6
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 3.2e-37 160.6 156 51.9
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.2e-36 158.7 170 50.0
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 1.1e-34 152.1 155 51.0
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 1.2e-28 132.1 167 44.9
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 1.6e-28 131.7 125 52.0
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 1.6e-28 131.7 148 46.6
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 3.5e-28 130.6 134 50.0
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 1.0e-27 129.0 112 56.2
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 3.9e-27 127.1 112 56.2
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 6.7e-27 126.3 114 55.3
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 1.5e-26 125.2 128 47.7
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 1.9e-26 124.8 153 46.4
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 1.9e-26 124.8 171 43.3
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 7.4e-26 122.9 114 53.5
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 8.1e-25 119.4 136 47.8
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 1.8e-24 118.2 161 44.7
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 1.5e-23 115.2 112 50.0
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 1.3e-22 112.1 114 50.9
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 1.9e-21 108.2 110 48.2
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 3.2e-21 107.5 114 48.2
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.6e-20 105.1 88 59.1
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 3.5e-20 104.0 131 42.7
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 3.5e-20 104.0 77 59.7
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 3.5e-20 104.0 77 59.7
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 4.6e-20 103.6 97 51.5
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 6.0e-20 103.2 117 45.3
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 7.9e-20 102.8 78 62.8
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 7.9e-20 102.8 64 71.9
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 2.3e-19 101.3 115 47.8
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 6.7e-19 99.8 114 46.5
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 1.1e-18 99.0 114 46.5
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 1.1e-18 99.0 114 46.5
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 1.9e-18 98.2 114 46.5
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 2.5e-18 97.8 114 46.5
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 5.7e-18 96.7 105 46.7
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 7.4e-18 96.3 105 46.7
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 9.6e-18 95.9 88 53.4
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 9.6e-18 95.9 88 53.4
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 1.6e-17 95.1 110 45.5
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 4.1e-16 90.5 64 64.1
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 1.2e-15 89.0 82 51.2
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 2.0e-15 88.2 82 51.2
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 2.0e-15 88.2 74 55.4
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 7.6e-15 86.3 149 36.9
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.3e-14 85.5 143 36.4
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 1.7e-14 85.1 72 58.3
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 8.4e-14 82.8 77 51.9
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 7.2e-13 79.7 69 52.2
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 7.2e-13 79.7 115 44.3
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 9.3e-13 79.3 64 57.8
Ciclev10011504m.g Citrus clementina HOM05D007456 ORTHO05D009411 1.2e-12 79.0 71 53.5
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 1.6e-12 78.6 125 40.0
BcaC02g09522 Brassica carinata HOM05D007456 ORTHO05D009411 2.1e-12 78.2 90 47.8
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 4.6e-12 77.0 82 46.3
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 6.1e-12 76.6 138 38.4
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 2.3e-11 74.7 91 42.9
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 2.3e-11 74.7 111 34.2
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 5.1e-11 73.6 81 44.4
Haze_00583 Corylus avellana HOM05D007456 ORTHO05D009411 1.5e-10 72.0 108 38.0
CANSAT54G1256 Cannabis sativa HOM05D007456 ORTHO05D028426 2.5e-10 71.2 78 44.9
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 3.3e-10 70.9 123 34.1
Cfa015911 Carpinus fangiana HOM05D007456 ORTHO05D009411 5.7e-10 70.1 91 41.8
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 1.3e-09 68.9 97 40.2
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 1.6e-09 68.6 118 37.3
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 1.6e-09 68.6 63 46.0
Migut.F00108 Erythranthe guttata HOM05D007456 ORTHO05D009411 2.8e-09 67.8 116 31.9
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 2.8e-09 67.8 61 52.5
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 2.8e-09 67.8 90 44.4
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.4e-08 65.5 97 37.1
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 1.4e-08 65.5 100 38.0
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 1.8e-08 65.1 85 37.6
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 1.8e-08 65.1 64 51.6
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 2.4e-08 64.7 131 33.6
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 9.0e-08 62.8 53 54.7
ECA232G3382 Erigeron canadensis HOM05D007456 ORTHO05D009411 9.0e-08 62.8 47 63.8
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.0e-07 61.6 53 52.8
CARHR194540 Cardamine hirsuta HOM05D007660 ORTHO05D009442 3.4e-07 60.8 94 36.2
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 3.4e-07 60.8 59 47.5
AL6G29730 Arabidopsis lyrata HOM05D007660 ORTHO05D009442 4.5e-07 60.5 88 35.2
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 4.5e-07 60.5 165 29.7
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 4.5e-07 60.5 60 46.7
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 5.9e-07 60.1 109 27.5
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.0e-06 59.3 82 40.2
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 1.7e-06 58.5 79 35.4
Cpa.g.sc332.2 Carica papaya HOM05D007173 ORTHO05D009589 2.2e-06 58.2 98 32.7
Oeu026572.1 Olea europaea HOM05D007456 ORTHO05D009411 2.9e-06 57.8 87 41.4
AT5G18475 Arabidopsis thaliana HOM05D007660 ORTHO05D009442 3.8e-06 57.4 103 34.0
Thhalv10010303m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 3.8e-06 57.4 107 32.7
Lsat_1_v5_gn_3_20581 Lactuca sativa HOM05D007358 ORTHO05D009117 3.8e-06 57.4 111 25.2
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 3.8e-06 57.4 51 49.0
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 5.0e-06 57.0 130 29.2
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 5.0e-06 57.0 84 35.7


User provided reference genes

Program Settings