Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.7e-24 114.8 69 100.0
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.3e-22 107.8 68 94.1
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.3e-22 107.8 68 94.1
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-21 105.9 68 92.6
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.2e-21 103.6 68 91.2
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 1.5e-19 99.0 68 88.2
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 2.0e-19 98.6 68 86.8
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 3.4e-19 97.8 68 85.3
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 5.8e-19 97.1 68 83.8
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 7.6e-19 96.7 68 83.8
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 1.3e-18 95.9 68 82.4
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.3e-18 95.9 68 82.4
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.7e-18 95.5 68 80.9
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.9e-18 94.7 68 83.8
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.9e-18 94.7 68 83.8
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.9e-18 94.7 68 80.9
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.9e-18 94.7 68 80.9
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.9e-18 94.7 68 79.4
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.9e-18 94.7 68 79.4
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.8e-18 94.4 67 80.6
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 3.8e-18 94.4 68 85.3
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 3.8e-18 94.4 68 80.9
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 4.9e-18 94.0 68 82.4
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 6.4e-18 93.6 68 80.9
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 6.4e-18 93.6 68 80.9
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 8.4e-18 93.2 67 82.1
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 8.4e-18 93.2 68 80.9
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 8.4e-18 93.2 68 80.9
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 8.4e-18 93.2 68 80.9
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 8.4e-18 93.2 68 80.9
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.1e-17 92.8 68 80.9
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 1.1e-17 92.8 67 77.6
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 1.1e-17 92.8 68 80.9
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 1.1e-17 92.8 68 80.9
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 1.4e-17 92.4 68 79.4
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 1.4e-17 92.4 68 76.5
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.4e-17 92.4 68 77.9
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.4e-17 92.4 68 80.9
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.4e-17 92.4 67 80.6
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 1.9e-17 92.0 68 79.4
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.9e-17 92.0 68 79.4
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.9e-17 92.0 66 80.3
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.9e-17 92.0 68 79.4
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 2.4e-17 91.7 68 80.9
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 2.4e-17 91.7 68 79.4
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 2.4e-17 91.7 68 76.5
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 3.2e-17 91.3 68 77.9
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 3.2e-17 91.3 68 80.9
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 3.2e-17 91.3 68 77.9
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.2e-17 91.3 68 76.5
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 4.2e-17 90.9 68 76.5
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 4.2e-17 90.9 68 76.5
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 4.2e-17 90.9 68 76.5
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 4.2e-17 90.9 67 79.1
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 4.2e-17 90.9 68 76.5
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 4.2e-17 90.9 68 79.4
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 5.4e-17 90.5 68 82.4
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 5.4e-17 90.5 68 76.5
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 5.4e-17 90.5 68 76.5
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 7.1e-17 90.1 68 79.4
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 7.1e-17 90.1 68 76.5
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 7.1e-17 90.1 68 75.0
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 7.1e-17 90.1 68 75.0
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 7.1e-17 90.1 68 76.5
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 9.3e-17 89.7 68 75.0
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 9.3e-17 89.7 68 76.5
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 75.0
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 73.5
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 75.0
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 73.5
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 75.0
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 73.5
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 75.0
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 75.0
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 76.5
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 77.9
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 75.0
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.6e-16 89.0 68 76.5
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 2.1e-16 88.6 68 75.0
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 2.1e-16 88.6 68 75.0
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 2.1e-16 88.6 68 77.9
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.1e-16 88.6 68 76.5
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 2.7e-16 88.2 68 75.0
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 2.7e-16 88.2 68 75.0
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 3.5e-16 87.8 68 77.9
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.6e-16 87.4 68 77.9
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 6.0e-16 87.0 66 77.3
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 6.0e-16 87.0 68 75.0
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 6.0e-16 87.0 68 73.5
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 6.0e-16 87.0 68 73.5
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 6.0e-16 87.0 68 79.4
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.0e-16 87.0 68 79.4
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 6.0e-16 87.0 68 75.0
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 7.8e-16 86.7 68 72.1
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 7.8e-16 86.7 68 72.1
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 7.8e-16 86.7 68 72.1
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 7.8e-16 86.7 68 72.1
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 7.8e-16 86.7 68 77.9
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 7.8e-16 86.7 68 76.5
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 7.8e-16 86.7 68 73.5
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 1.0e-15 86.3 68 75.0
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.3e-15 85.9 68 72.1
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 1.7e-15 85.5 68 73.5
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.7e-15 85.5 68 72.1
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.7e-15 85.5 68 72.1
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.7e-15 85.5 68 72.1
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.7e-15 85.5 68 72.1
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.7e-15 85.5 68 72.1
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 2.3e-15 85.1 68 72.1
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 2.3e-15 85.1 66 75.8
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 3.0e-15 84.7 68 69.1
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 3.0e-15 84.7 68 69.1
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 3.0e-15 84.7 67 74.6
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.0e-15 84.7 68 77.9
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 5.1e-15 84.0 72 73.6
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 6.6e-15 83.6 68 75.0
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 8.7e-15 83.2 79 68.4
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 8.7e-15 83.2 68 70.6
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.3e-14 81.3 68 67.6
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 3.3e-14 81.3 68 73.5
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 4.3e-14 80.9 68 70.6
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 5.6e-14 80.5 68 66.2
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 1.6e-13 79.0 68 72.1
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 2.8e-13 78.2 66 66.7
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 3.6e-13 77.8 69 68.1
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.1e-12 76.3 68 67.6
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.4e-12 75.9 68 67.6
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 3.1e-12 74.7 68 69.1
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 6.9e-12 73.6 68 67.6
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 1.2e-11 72.8 68 66.2
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.5e-11 72.4 68 69.1
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 9.9e-11 69.7 57 66.7
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.7e-10 68.9 56 71.4
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.7e-10 68.9 68 60.3
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.9e-09 65.5 55 67.3
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 2.4e-09 65.1 68 63.2
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 4.2e-09 64.3 68 63.2
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 1.2e-08 62.8 68 57.4
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 2.1e-08 62.0 45 73.3
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 2.7e-08 61.6 68 60.3
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 4.6e-08 60.8 43 76.7
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.6e-08 60.8 43 76.7
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.6e-08 60.8 43 76.7
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.6e-08 60.8 68 58.8
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 4.6e-08 60.8 68 58.8
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 4.6e-08 60.8 43 76.7
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 1.1e-06 56.2 68 57.4
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.5e-06 55.8 68 55.9
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 3.3e-06 54.7 68 57.4


User provided reference genes

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