Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 0.0e+00 1411.4 720 100.0
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 0.0e+00 1401.7 720 99.3
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 0.0e+00 1349.0 700 98.7
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 0.0e+00 1226.1 720 87.2
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 0.0e+00 1173.7 720 84.0
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 0.0e+00 1167.1 742 81.9
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 1.7e-291 1005.7 724 71.8
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 8.9e-288 993.4 722 70.5
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 3.0e-283 978.4 711 70.9
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 6.6e-283 977.2 722 70.2
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 9.6e-282 973.4 710 70.8
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.5e-279 966.1 721 69.3
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 2.0e-279 965.7 714 68.8
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 5.8e-279 964.1 724 68.5
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.9e-277 959.1 721 68.7
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 1.6e-276 956.1 697 71.2
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 7.8e-276 953.7 724 70.0
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 1.3e-275 953.0 714 68.6
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 1.5e-271 939.5 711 67.9
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 2.6e-271 938.7 718 66.7
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 7.6e-271 937.2 710 67.9
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 2.9e-270 935.3 709 67.6
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 1.4e-269 932.9 709 67.3
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 1.4e-269 932.9 742 65.8
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 7.1e-269 930.6 712 67.6
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 3.5e-268 928.3 710 69.0
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 6.0e-268 927.5 710 66.9
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 3.0e-267 925.2 741 64.5
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 6.7e-267 924.1 723 64.6
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 6.7e-267 924.1 709 66.9
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 1.1e-266 923.3 709 67.0
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.5e-266 922.2 732 65.2
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 5.6e-266 921.0 705 67.7
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 6.2e-265 917.5 732 65.0
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.4e-264 916.4 745 64.0
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 1.2e-263 913.3 718 66.7
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 4.5e-263 911.4 653 70.8
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 3.8e-262 908.3 723 63.5
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 4.9e-262 907.9 693 67.7
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 1.9e-261 906.0 709 65.4
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 7.1e-261 904.0 712 64.0
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 9.3e-261 903.7 726 63.4
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 1.9e-258 896.0 701 65.9
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 9.6e-258 893.6 711 64.7
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 2.8e-257 892.1 712 64.5
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 1.8e-256 889.4 712 64.9
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 1.3e-251 873.2 720 63.8
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 9.7e-250 867.1 708 63.3
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 3.7e-249 865.1 717 63.7
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 6.3e-249 864.4 713 63.5
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.0e-247 859.4 652 67.2
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 2.0e-247 859.4 729 62.4
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 1.0e-246 857.1 682 64.2
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 1.0e-246 857.1 715 62.9
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 3.6e-244 848.6 708 63.1
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 6.1e-244 847.8 710 62.5
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 8.7e-243 844.0 715 62.2
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 4.3e-242 841.6 652 65.8
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 4.3e-242 841.6 695 63.2
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 4.3e-242 841.6 705 62.4
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.6e-241 839.7 703 63.3
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 1.2e-239 833.6 697 63.7
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 2.0e-239 832.8 705 62.7
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 4.5e-239 831.6 721 60.6
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 2.2e-238 829.3 727 59.1
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 1.4e-237 826.6 722 60.4
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 3.9e-235 818.5 718 60.2
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.5e-234 816.6 663 65.2
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 2.0e-234 816.2 689 62.0
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 9.7e-234 813.9 714 59.9
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 1.3e-233 813.5 722 60.9
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 2.2e-233 812.8 604 68.7
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 4.1e-232 808.5 714 59.4
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 2.0e-231 806.2 722 59.8
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 5.9e-231 804.7 621 66.0
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 2.2e-230 802.7 711 59.9
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 3.8e-230 802.0 717 60.8
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 5.0e-230 801.6 706 61.0
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 1.4e-229 800.0 717 60.3
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 9.4e-229 797.3 729 59.3
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 4.7e-228 795.0 719 59.7
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 1.0e-227 793.9 719 59.4
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 2.3e-227 792.7 719 59.4
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 3.0e-227 792.3 717 59.7
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 3.9e-227 792.0 719 59.9
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 3.9e-227 792.0 699 60.8
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 8.8e-227 790.8 717 59.6
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 2.6e-226 789.3 717 59.1
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 3.3e-226 788.9 616 66.1
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 5.7e-226 788.1 719 59.4
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 6.7e-219 764.6 691 59.5
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.0e-218 763.1 627 64.1
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 1.3e-217 760.4 722 57.1
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 8.2e-217 757.7 716 58.0
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 1.0e-214 750.7 778 54.0
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 1.9e-213 746.5 742 54.7
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 1.2e-212 743.8 602 64.3
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 2.9e-206 722.6 715 54.1
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 3.8e-206 722.2 595 64.7
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.3e-201 707.2 724 55.9
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 2.5e-197 693.0 721 51.6
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 3.0e-195 686.0 707 53.2
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 3.6e-188 662.5 517 65.8
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 9.9e-178 627.9 719 50.3
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 3.2e-176 622.9 612 53.3
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 6.0e-167 592.0 421 72.2
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 5.1e-166 589.0 640 53.6
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 7.6e-162 575.1 525 61.0
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 7.6e-146 521.9 504 56.7
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 6.0e-143 512.3 724 46.5
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 2.2e-137 493.8 429 61.1
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 1.1e-117 428.3 751 38.2
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 1.4e-112 411.4 760 36.7
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 2.9e-105 387.1 722 36.6
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 5.2e-94 349.7 499 42.5
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 3.4e-85 320.5 346 49.7
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 1.3e-84 318.5 331 51.7
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.7e-81 308.1 303 58.7
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 1.2e-66 258.8 288 52.4
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.1e-62 245.7 233 54.5
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 2.0e-53 214.9 272 48.9
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 1.7e-52 211.8 253 44.3
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 1.5e-48 198.7 166 60.8
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 1.2e-42 179.1 436 31.2
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 4.2e-35 154.1 153 55.6
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 6.5e-28 130.2 649 24.3
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 8.4e-28 129.8 129 54.3
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 1.4e-22 112.5 97 58.8
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 2.6e-21 108.2 310 30.0
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 2.9e-20 104.8 95 56.8
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 2.5e-19 101.7 62 77.4
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 3.8e-12 77.8 89 47.2
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 9.4e-11 73.2 65 58.5
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 3.9e-09 67.8 52 71.2


User provided reference genes

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