Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 2.9e-66 255.0 119 100.0
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.3e-62 241.5 118 94.9
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 2.8e-61 238.4 118 94.1
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.7e-61 237.7 118 94.1
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-60 236.1 118 93.2
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.4e-60 235.3 118 90.7
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 5.2e-60 234.2 118 92.4
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 6.8e-60 233.8 118 92.4
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 8.9e-60 233.4 118 92.4
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 8.9e-60 233.4 117 92.3
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 1.5e-59 232.6 118 91.5
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 1.5e-59 232.6 118 91.5
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 2.0e-59 232.3 118 91.5
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 2.6e-59 231.9 118 91.5
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-59 231.5 119 92.4
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 4.4e-59 231.1 118 91.5
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 4.4e-59 231.1 118 91.5
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 4.4e-59 231.1 118 91.5
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 4.4e-59 231.1 118 91.5
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 4.4e-59 231.1 118 91.5
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 4.4e-59 231.1 118 91.5
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 5.8e-59 230.7 118 91.5
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 2.2e-58 228.8 118 90.7
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 2.2e-58 228.8 118 90.7
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 2.2e-58 228.8 118 90.7
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 3.8e-58 228.0 118 89.8
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 1.9e-57 225.7 118 89.0
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.9e-57 225.7 115 92.2
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 3.2e-57 224.9 119 89.9
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 3.2e-57 224.9 119 89.9
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 2.7e-56 221.9 119 89.1
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 7.8e-56 220.3 119 88.2
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 1.5e-54 216.1 117 88.0
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.1e-52 209.9 119 84.9
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 1.8e-52 209.1 109 89.0
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 6.9e-52 207.2 118 84.7
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 1.5e-51 206.1 119 84.0
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 9.9e-51 203.4 119 83.2
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.7e-50 202.6 119 79.0
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 8.4e-50 200.3 102 91.2
BraSC59t46506Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-49 199.5 102 92.2
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 1.4e-49 199.5 109 86.2
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 9.3e-49 196.8 118 82.2
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 2.7e-48 195.3 102 89.2
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 3.5e-48 194.9 115 80.9
SalBow1G2814 Salvia bowleyana HOM05D000963 ORTHO05D004715 6.0e-48 194.1 108 85.2
SalBow1G5969 Salvia bowleyana HOM05D000963 ORTHO05D004715 6.0e-48 194.1 108 85.2
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 3.0e-47 191.8 118 79.7
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.1e-46 189.9 119 79.0
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.4e-44 183.0 92 92.4
Oeu050315.1 Olea europaea HOM05D000963 ORTHO05D004715 3.1e-44 181.8 97 88.7
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.0e-44 181.4 92 90.2
Gohir.D11G164850 Gossypium hirsutum HOM05D000963 ORTHO05D004715 9.0e-44 180.3 90 94.4
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.4e-43 178.3 92 89.1
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 5.8e-43 177.6 92 89.1
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-42 176.4 92 90.2
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 2.2e-42 175.6 131 71.0
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 4.9e-42 174.5 92 88.0
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 8.4e-42 173.7 118 74.6
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.1e-41 173.3 118 73.7
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.4e-41 171.0 85 94.1
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 3.5e-40 168.3 92 85.9
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 3.5e-40 168.3 92 85.9
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 3.9e-39 164.9 92 84.8
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 3.9e-39 164.9 92 84.8
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 3.9e-39 164.9 92 84.8
Lsat_1_v5_gn_2_90421 Lactuca sativa HOM05D000963 ORTHO05D004715 9.6e-38 160.2 92 84.8
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 1.8e-36 156.0 76 93.4
Gohir.A01G119775 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.4e-36 155.6 80 91.2
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.1e-36 155.2 107 73.8
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 5.3e-36 154.5 92 79.3
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 5.8e-35 151.0 92 77.2
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 7.6e-35 150.6 77 90.9
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 1.0e-34 150.2 77 89.6
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 3.8e-34 148.3 76 89.5
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 6.5e-34 147.5 76 89.5
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 1.4e-33 146.4 76 86.8
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 1.9e-33 146.0 76 88.2
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 4.2e-33 144.8 118 63.6
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-32 141.7 76 86.8
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 1.0e-31 140.2 76 85.5
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.8e-31 139.4 76 85.5
Nitab4.5_0004137g0020 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.0e-31 138.7 92 79.3
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 5.1e-31 137.9 76 84.2
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.1e-31 137.9 71 88.7
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 6.7e-31 137.5 84 79.8
COL.COLO4_03191 Corchorus olitorius HOM05D000963 ORTHO05D004715 3.3e-30 135.2 96 71.9
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 4.3e-30 134.8 81 79.0
Cpa.g.sc302.1 Carica papaya HOM05D000963 ORTHO05D004715 2.8e-29 132.1 66 93.9
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-28 129.8 76 80.3
Potri.002G263451 Populus trichocarpa HOM05D000963 ORTHO05D004715 1.4e-28 129.8 80 77.5
BolSC46t60965H Brassica oleracea HOM05D000963 ORTHO05D004715 1.8e-28 129.4 66 92.4
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 1.8e-28 129.4 76 80.3
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 4.1e-28 128.3 76 77.6
Nitab4.5_0007400g0120 Nicotiana tabacum HOM05D000963 ORTHO05D004715 5.3e-28 127.9 93 72.0
BolSC29t60514H Brassica oleracea HOM05D000963 ORTHO05D004715 6.9e-28 127.5 66 90.9
BraSC59t46544Z Brassica rapa HOM05D000963 ORTHO05D004715 6.9e-28 127.5 68 88.2
BolSC29t60553H Brassica oleracea HOM05D000963 ORTHO05D004715 2.6e-27 125.6 64 92.2
BolC2t10589H Brassica oleracea HOM05D000963 ORTHO05D004715 2.2e-26 122.5 66 87.9
Manes.18G094701 Manihot esculenta HOM05D000963 ORTHO05D004715 1.1e-25 120.2 73 78.1
BolSC35t60711H Brassica oleracea HOM05D000963 ORTHO05D004715 1.9e-25 119.4 66 86.4
BolSC49t61150H Brassica oleracea HOM05D000963 ORTHO05D004715 1.9e-25 119.4 66 86.4
BolSC45t60901H Brassica oleracea HOM05D000963 ORTHO05D004715 7.2e-25 117.5 66 84.8
BolC2t10606H Brassica oleracea HOM05D000963 ORTHO05D004715 1.8e-23 112.8 67 83.6
BcaNung01516 Brassica carinata HOM05D000963 ORTHO05D004715 3.0e-23 112.1 56 89.3
Glyma.06G274000 Glycine max HOM05D000963 ORTHO05D004715 5.1e-23 111.3 111 58.6
Rhsim12G0135200 Rhododendron simsii HOM05D000963 ORTHO05D004715 3.3e-22 108.6 51 94.1
unitig_91.g26522 Utricularia gibba HOM05D000963 ORTHO05D004715 4.3e-22 108.2 53 88.7
unitig_91.g26525 Utricularia gibba HOM05D000963 ORTHO05D004715 4.3e-22 108.2 53 88.7
Mapoly0147s0015 Marchantia polymorpha HOM05D000963 ORTHO05D004715 3.7e-21 105.1 108 55.6
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 3.7e-21 105.1 74 71.6
EL10Ac7g17374 Beta vulgaris HOM05D000963 ORTHO05D004715 8.2e-21 104.0 62 80.6
EL10Ac7g17381 Beta vulgaris HOM05D000963 ORTHO05D004715 1.5e-19 99.8 62 77.4
Sabra08G0089800 Salix brachista HOM05D000963 ORTHO05D004715 2.0e-19 99.4 92 57.6
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 4.5e-19 98.2 55 80.0
DCAR_017253 Daucus carota HOM05D000963 ORTHO05D004715 7.2e-17 90.9 58 77.6
BolSC43t60811H Brassica oleracea HOM05D000963 ORTHO05D004715 1.2e-16 90.1 45 93.3
BraSC179t45779Z Brassica rapa HOM05D000963 ORTHO05D004715 4.6e-16 88.2 46 89.1
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 4.6e-16 88.2 40 95.0
Lj4g0000207 Lotus japonicus HOM05D000963 ORTHO05D004715 1.8e-15 86.3 41 95.1
Oeu054713.1 Olea europaea HOM05D000963 ORTHO05D004715 1.8e-15 86.3 48 85.4
FAN01G1433 Fragaria x ananassa HOM05D000963 ORTHO05D004715 2.3e-15 85.9 53 79.2
Hma1.2p1_0051F.1_g029250 Hydrangea macrophylla HOM05D000963 ORTHO05D004715 3.9e-15 85.1 38 94.7
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 8.8e-15 84.0 40 92.5
arahy.Tifrunner.gnm1.ann1.HN8ZWX Arachis hypogaea HOM05D000963 ORTHO05D004715 2.5e-14 82.4 41 90.2
Oeu033793.1 Olea europaea HOM05D001982 ORTHO05D003938 2.5e-14 82.4 54 75.9
FvH4_7g01961 Fragaria vesca HOM05D000963 ORTHO05D004715 3.3e-14 82.0 63 61.9
FAN06G2610 Fragaria x ananassa HOM05D000963 ORTHO05D004715 3.3e-14 82.0 63 61.9
Thecc.09G087300 Theobroma cacao HOM05D000963 ORTHO05D004715 4.3e-14 81.6 43 90.7
Medtr1g105230 Medicago truncatula HOM05D000963 ORTHO05D004715 1.1e-12 77.0 36 94.4
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 1.3e-10 70.1 49 69.4
Gohir.A01G139250 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.8e-10 68.6 32 93.8
TPR.G27622 Trifolium pratense HOM05D000963 ORTHO05D004715 5.0e-10 68.2 32 90.6
Psat5g119040 Pisum sativum HOM05D000963 ORTHO05D004715 4.2e-09 65.1 76 52.6
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 2.7e-08 62.4 40 72.5
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 2.7e-08 62.4 40 72.5
Sc21g0003630 Simmondsia chinensis HOM05D000556 ORTHO05D000404 1.0e-07 60.5 46 67.4
arahy.Tifrunner.gnm1.ann1.QZA5BL Arachis hypogaea HOM05D000963 ORTHO05D004715 4.4e-06 55.1 37 67.6


User provided reference genes

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