Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 0.0e+00 1164.8 591 100.0
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 0.0e+00 1164.8 591 100.0
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 0.0e+00 1159.4 566 99.6
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 2.4e-307 1058.1 568 89.3
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.0e-305 1051.2 565 89.9
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.1e-303 1045.0 572 89.0
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.6e-293 1011.5 567 85.0
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 7.6e-293 1010.0 567 84.8
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.3e-292 1009.2 566 84.1
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.7e-290 1001.5 567 84.3
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 8.7e-289 996.5 566 83.2
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 2.5e-288 995.0 567 83.4
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.3e-288 994.6 569 82.8
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 3.3e-288 994.6 566 83.9
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 7.3e-288 993.4 575 84.0
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 4.8e-287 990.7 566 82.5
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 2.4e-286 988.4 566 82.9
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.2e-285 986.1 567 82.4
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 1.5e-285 985.7 566 82.0
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 3.4e-285 984.6 545 85.7
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 4.4e-285 984.2 573 82.5
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 5.8e-285 983.8 567 82.9
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.3e-284 982.6 574 81.7
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 4.9e-284 980.7 566 83.2
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 4.9e-284 980.7 567 82.5
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 8.4e-284 979.9 568 82.7
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.2e-283 978.0 572 81.8
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 5.4e-283 977.2 573 80.8
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 7.8e-282 973.4 567 82.7
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.3e-281 972.6 571 82.0
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.5e-280 969.1 570 81.2
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 1.5e-280 969.1 567 81.1
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.5e-280 968.4 560 82.0
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.6e-279 965.7 568 81.0
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 2.8e-279 964.9 567 80.6
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 4.8e-279 964.1 572 81.3
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.4e-278 962.6 572 81.1
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 3.1e-278 961.4 574 81.0
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 4.0e-278 961.1 576 79.3
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 4.0e-278 961.1 565 81.2
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 6.9e-278 960.3 566 80.9
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 9.0e-278 959.9 572 80.6
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 4.5e-277 957.6 563 81.3
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 4.5e-277 957.6 588 79.4
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 4.5e-277 957.6 568 80.3
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.3e-276 956.1 569 81.9
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 2.2e-276 955.3 576 78.3
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.1e-275 953.0 567 81.0
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 7.1e-275 950.3 568 79.2
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 9.3e-275 949.9 570 78.2
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 9.3e-275 949.9 570 78.1
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 3.5e-274 948.0 566 79.9
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 3.5e-274 948.0 573 79.9
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 7.9e-274 946.8 567 78.7
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 1.3e-273 946.0 568 80.3
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 1.3e-273 946.0 574 79.3
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 1.3e-273 946.0 577 78.3
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 2.3e-273 945.3 559 80.1
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 2.3e-273 945.3 566 78.4
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 2.3e-273 945.3 565 78.6
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 3.9e-273 944.5 573 78.0
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 6.7e-273 943.7 586 78.8
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.9e-272 942.2 570 78.9
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.9e-272 942.2 579 78.1
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 4.3e-272 941.0 568 78.7
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 7.4e-272 940.3 566 80.2
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.3e-271 939.5 570 79.5
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.1e-271 938.7 593 76.9
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.7e-271 937.9 593 76.7
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 6.2e-271 937.2 547 80.3
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 8.1e-271 936.8 571 79.5
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.4e-270 936.0 573 79.2
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.4e-270 936.0 576 77.8
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 3.1e-270 934.9 575 78.6
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 3.1e-270 934.9 574 78.7
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.1e-270 934.9 593 76.6
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 3.1e-270 934.9 558 79.4
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 3.1e-270 934.9 570 79.1
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.3e-270 934.1 593 76.6
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 5.3e-270 934.1 571 77.8
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 1.2e-269 932.9 570 78.1
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 2.6e-269 931.8 576 78.5
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 3.4e-269 931.4 574 78.4
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.4e-269 931.4 590 76.3
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.0e-268 929.9 573 78.5
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.7e-268 929.1 570 77.4
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 3.8e-268 927.9 576 77.8
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 6.5e-268 927.2 588 76.7
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 8.4e-268 926.8 590 75.8
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 4.2e-267 924.5 564 77.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 5.5e-267 924.1 569 76.8
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 7.1e-267 923.7 567 78.5
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 7.1e-267 923.7 555 78.4
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 2.1e-266 922.2 574 77.4
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.1e-266 922.2 560 79.3
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.5e-266 921.4 569 77.3
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 6.0e-266 920.6 569 78.4
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 2.3e-265 918.7 569 76.8
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 2.3e-265 918.7 570 77.0
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 8.7e-265 916.8 569 76.3
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 2.5e-264 915.2 571 76.9
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 3.3e-264 914.8 569 76.1
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 4.3e-264 914.4 569 76.6
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 5.7e-264 914.1 569 76.3
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 7.4e-264 913.7 569 76.6
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 9.6e-264 913.3 571 76.7
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 9.6e-264 913.3 571 76.7
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.3e-263 912.9 552 79.5
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.3e-263 912.9 670 68.1
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 2.8e-263 911.8 571 76.5
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 2.8e-263 911.8 571 76.7
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 3.7e-263 911.4 517 83.2
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 4.8e-263 911.0 571 76.7
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 5.0e-260 901.0 538 79.4
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 6.1e-258 894.0 568 77.6
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 9.7e-256 886.7 605 73.7
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 1.2e-253 879.8 519 80.9
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 8.5e-252 873.6 577 75.0
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 7.9e-250 867.1 519 79.6
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 4.2e-243 844.7 496 82.1
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 4.7e-242 841.3 573 72.1
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 3.9e-241 838.2 567 74.4
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 4.4e-240 834.7 550 72.2
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 2.2e-239 832.4 552 70.8
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.1e-238 827.0 864 52.2
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.9e-236 822.0 565 73.1
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 1.1e-235 820.1 904 50.8
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 3.1e-214 748.8 563 64.5
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 6.8e-209 731.1 511 71.6
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 2.6e-208 729.2 401 86.8
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 5.2e-201 704.9 562 59.6
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 3.6e-194 682.2 435 73.3
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 1.1e-177 627.5 338 90.2
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.5e-173 612.5 432 71.5
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 2.2e-159 566.6 420 69.5
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 8.1e-154 548.1 565 48.8
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.3e-147 526.2 307 84.0
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.8e-140 503.8 443 63.0
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.7e-117 426.0 350 58.3
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.2e-101 374.8 468 42.5
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 8.0e-101 372.1 440 43.4
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 8.3e-98 362.1 513 38.0
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 3.1e-97 360.1 212 76.9
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 2.0e-88 330.9 188 87.2
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.5e-86 324.7 202 72.3
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 1.1e-78 298.5 614 32.7
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.6e-78 296.2 213 68.1
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.2e-75 288.5 212 66.5
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.2e-75 288.5 212 66.5
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.5e-70 271.6 161 75.8
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 5.2e-68 263.1 165 72.7
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.9e-65 254.6 366 35.8
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.9e-54 218.0 228 53.9
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.1e-44 185.7 109 84.4
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.4e-33 148.7 122 58.2
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.1e-30 139.0 72 93.1
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 5.9e-27 126.7 133 50.4
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 5.9e-27 126.7 133 50.4
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.4e-19 100.9 105 55.2
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 1.8e-15 88.6 44 84.1
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 8.8e-15 86.3 48 72.9
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 8.8e-15 86.3 48 72.9
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 6.3e-13 80.1 48 70.8
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 3.1e-12 77.8 42 73.8
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 2.0e-11 75.1 47 74.5


User provided reference genes

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