Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 3.6e-285 984.2 472 100.0
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 2.2e-279 964.9 472 98.1
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 2.0e-264 915.2 472 94.3
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 2.1e-197 692.6 406 81.8
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 1.4e-196 689.9 465 68.8
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 4.0e-196 688.3 463 69.3
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 1.1e-193 680.2 463 68.0
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 4.6e-192 674.9 464 66.2
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 1.8e-191 672.9 462 67.1
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 4.3e-190 668.3 465 66.7
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 2.2e-186 656.0 463 65.0
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 1.3e-183 646.7 464 64.2
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 3.0e-183 645.6 467 64.2
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 2.5e-182 642.5 463 64.8
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 4.3e-182 641.7 462 65.2
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 5.6e-182 641.3 463 63.5
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 8.2e-181 637.5 464 64.0
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 3.8e-178 628.6 445 66.5
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 4.9e-178 628.2 466 63.9
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 4.9e-178 628.2 463 63.5
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 3.5e-176 622.1 463 63.5
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 3.5e-176 622.1 466 61.4
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 5.1e-175 618.2 466 62.2
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 1.1e-174 617.1 463 62.9
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 7.4e-174 614.4 463 61.6
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 1.3e-173 613.6 468 62.2
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 6.9e-172 607.8 464 60.6
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 1.5e-171 606.7 472 60.2
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 3.4e-171 605.5 464 60.3
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 1.0e-170 604.0 464 60.6
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 1.0e-170 604.0 464 60.1
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 1.3e-170 603.6 463 61.3
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 6.5e-170 601.3 466 61.2
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 1.4e-169 600.1 464 60.8
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 3.2e-169 599.0 467 60.4
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 3.2e-169 599.0 494 58.9
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 1.2e-168 597.0 464 60.3
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 2.7e-168 595.9 462 58.7
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 2.7e-168 595.9 482 57.9
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 3.6e-168 595.5 437 63.2
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 3.6e-168 595.5 463 60.5
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 6.1e-168 594.7 481 59.7
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 7.9e-168 594.3 466 59.2
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 2.3e-167 592.8 459 61.0
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 5.1e-167 591.7 481 59.7
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 7.4e-166 587.8 465 58.7
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 7.4e-166 587.8 445 61.6
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 2.8e-165 585.9 465 58.5
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.8e-165 585.1 481 59.3
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 2.4e-164 582.8 451 59.6
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 7.7e-163 577.8 496 56.5
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 1.0e-162 577.4 463 58.3
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 6.5e-162 574.7 464 57.5
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 6.5e-162 574.7 464 57.5
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 8.5e-162 574.3 468 59.6
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 7.2e-161 571.2 349 75.1
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 4.7e-160 568.5 470 56.8
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 1.4e-159 567.0 490 55.3
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 2.3e-159 566.2 486 55.3
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 8.8e-159 564.3 424 63.2
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 1.1e-158 563.9 489 55.0
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 3.7e-157 558.9 480 57.9
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 1.2e-152 543.9 351 70.7
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 1.4e-148 530.4 379 64.6
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 7.0e-148 528.1 398 62.1
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 7.7e-147 524.6 457 56.5
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 1.0e-146 524.2 427 58.1
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.6e-144 516.9 543 49.4
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 2.1e-144 516.5 520 51.5
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 9.1e-140 501.1 352 64.5
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 1.9e-137 493.4 349 65.6
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 4.2e-137 492.3 561 47.8
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 1.2e-136 490.7 464 53.0
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 1.2e-136 490.7 448 52.5
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.6e-136 490.3 575 46.1
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 1.8e-135 486.9 404 56.7
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 7.5e-134 481.5 464 49.1
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 4.8e-133 478.8 496 47.0
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 3.1e-132 476.1 382 59.9
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 1.7e-130 470.3 350 63.4
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.4e-126 456.1 396 56.1
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 2.9e-122 443.0 381 57.7
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 1.5e-121 440.7 401 51.1
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 9.2e-116 421.4 383 53.5
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 4.4e-110 402.5 460 46.5
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.7e-109 400.6 475 46.7
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 2.2e-109 400.2 419 50.1
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 6.8e-95 352.1 425 45.6
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 1.2e-94 351.3 196 79.1
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 1.5e-94 350.9 305 59.0
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 7.8e-91 338.6 264 59.8
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 2.8e-88 330.1 224 67.4
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 2.0e-86 323.9 464 39.7
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 3.2e-84 316.6 261 59.4
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 3.5e-83 313.2 242 61.6
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 3.1e-79 300.1 263 54.4
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 5.8e-78 295.8 506 36.4
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 7.6e-78 295.4 206 66.0
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 2.3e-74 283.9 166 73.5
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 5.3e-71 272.7 236 58.5
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 2.6e-70 270.4 317 46.7
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 1.8e-66 257.7 156 74.4
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 1.8e-66 257.7 500 32.4
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 5.1e-66 256.1 221 54.8
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-65 254.6 156 73.7
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 7.1e-60 235.7 439 32.3
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 6.1e-43 179.5 308 34.1
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 7.9e-43 179.1 204 45.6
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 3.0e-42 177.2 250 38.4
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 3.0e-42 177.2 234 39.3
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 6.7e-42 176.0 250 38.4
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 1.1e-39 168.7 79 93.7
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 1.0e-34 152.1 89 76.4
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 5.5e-28 129.8 378 26.5
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 3.6e-27 127.1 154 42.9
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 3.6e-27 127.1 68 77.9
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-25 121.7 104 54.8
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 5.7e-25 119.8 87 59.8
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 4.5e-22 110.2 103 50.5
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.1e-20 105.5 230 29.1
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 1.1e-20 105.5 73 60.3
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.9e-20 104.8 127 46.5
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 7.2e-20 102.8 281 27.0
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 1.2e-19 102.1 95 51.6
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 1.0e-18 99.0 109 45.0
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 3.0e-18 97.4 108 46.3
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 1.2e-14 85.5 98 45.9
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 9.5e-12 75.9 54 63.0
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 2.1e-11 74.7 86 47.7
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.4e-10 72.0 42 71.4
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 4.5e-06 57.0 94 35.1


User provided reference genes

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