Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 8.4e-207 723.4 349 100.0
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 7.6e-200 700.3 349 96.6
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 8.1e-178 627.1 349 86.5
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 5.3e-177 624.4 349 86.0
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.9e-177 624.0 349 86.0
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 6.7e-164 580.9 349 80.2
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 5.7e-163 577.8 349 79.4
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.9e-156 555.1 349 76.2
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 5.2e-132 474.9 281 79.0
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 8.8e-132 474.2 345 64.6
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 3.4e-131 472.2 347 64.6
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 4.4e-131 471.9 347 65.1
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 9.8e-131 470.7 351 65.0
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.3e-130 470.3 350 65.4
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 2.2e-130 469.5 349 63.6
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 2.8e-130 469.2 349 65.0
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 1.1e-129 467.2 349 64.8
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 1.1e-129 467.2 348 64.7
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 1.4e-129 466.8 349 63.0
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 4.1e-129 465.3 349 63.0
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 5.4e-129 464.9 349 63.6
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.5e-126 456.1 347 63.4
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.5e-126 456.1 347 63.4
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 3.2e-126 455.7 347 63.4
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 7.2e-126 454.5 347 61.4
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.6e-125 453.4 350 61.7
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.6e-125 453.4 352 60.2
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 2.8e-125 452.6 345 60.9
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 6.1e-125 451.4 343 61.5
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 8.0e-125 451.1 353 59.8
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.0e-124 449.1 347 62.8
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 3.7e-122 442.2 348 60.9
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.8e-121 439.9 347 60.8
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 2.4e-121 439.5 347 58.8
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 4.1e-121 438.7 343 58.9
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.2e-120 437.2 293 65.5
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 2.7e-120 436.0 336 63.4
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 7.8e-120 434.5 348 58.3
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 5.0e-119 431.8 349 60.7
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 5.0e-119 431.8 291 68.7
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 2.5e-118 429.5 358 58.4
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 3.3e-118 429.1 297 67.3
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 3.3e-118 429.1 292 64.4
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 7.3e-118 427.9 328 62.2
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 7.3e-118 427.9 341 60.4
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 2.1e-117 426.4 343 59.2
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 2.8e-117 426.0 296 63.5
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 6.1e-117 424.9 350 58.9
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 5.2e-116 421.8 337 59.1
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 8.9e-116 421.0 347 57.9
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 1.5e-115 420.2 365 53.7
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.5e-115 420.2 339 60.2
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 3.4e-115 419.1 365 55.1
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 3.4e-115 419.1 350 58.0
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 4.4e-115 418.7 337 59.1
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 7.5e-115 417.9 329 59.6
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 3.7e-114 415.6 339 57.2
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 4.9e-114 415.2 321 62.9
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 8.3e-114 414.5 306 61.4
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 1.4e-113 413.7 349 55.6
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 1.4e-113 413.7 334 59.3
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.8e-113 413.3 354 55.9
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 7.0e-113 411.4 332 59.0
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 5.9e-112 408.3 334 58.7
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 2.3e-111 406.4 336 57.4
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 3.0e-111 406.0 342 56.7
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 3.0e-111 406.0 342 56.1
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 3.0e-111 406.0 326 58.6
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 6.6e-111 404.8 354 57.3
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.1e-110 404.1 340 55.0
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 1.5e-110 403.7 342 55.8
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.5e-110 403.7 356 55.9
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.3e-110 402.5 336 55.4
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.3e-110 402.1 332 55.7
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 1.2e-109 400.6 349 56.7
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 1.0e-108 397.5 348 56.6
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 5.2e-108 395.2 286 62.9
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 1.5e-107 393.7 329 54.4
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.6e-107 392.9 349 55.9
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 2.6e-107 392.9 352 55.1
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 4.4e-107 392.1 330 57.9
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 3.7e-106 389.0 289 60.6
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 6.4e-106 388.3 350 55.4
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 6.4e-106 388.3 350 55.4
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 6.4e-106 388.3 350 55.4
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 1.1e-105 387.5 350 55.7
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.9e-105 386.7 350 55.7
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 3.2e-105 386.0 328 57.6
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 1.0e-103 380.9 327 54.7
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 3.0e-103 379.4 350 53.4
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 5.0e-103 378.6 295 60.7
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 2.1e-101 373.2 352 51.1
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 6.4e-98 361.7 344 50.0
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 1.9e-94 350.1 341 50.7
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 2.1e-93 346.7 351 49.0
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 3.4e-91 339.3 352 48.0
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 7.6e-91 338.2 316 50.0
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 2.4e-89 333.2 294 53.7
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 4.1e-89 332.4 290 52.1
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.1e-88 330.1 336 48.5
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.7e-88 329.7 339 51.0
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.0e-87 327.8 284 52.5
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 1.7e-87 327.0 250 61.2
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.5e-83 313.9 154 99.4
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 8.7e-79 298.1 270 55.2
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.4e-73 280.0 279 48.0
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 3.2e-73 279.6 296 48.0
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 5.4e-73 278.9 290 47.9
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.2e-72 277.7 220 57.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.0e-71 273.1 328 43.6
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.5e-70 270.8 333 42.3
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 9.9e-67 258.1 298 42.6
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 1.3e-63 247.7 320 41.9
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.3e-63 246.9 336 39.6
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 7.6e-59 231.9 188 56.4
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-50 202.2 306 36.3
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-49 201.1 310 36.5
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-49 200.3 291 37.8
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.7e-45 187.6 286 33.9
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 3.7e-45 186.4 284 34.2
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.5e-43 179.5 292 37.0
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.8e-42 176.4 298 36.6
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-41 174.9 313 32.6
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-41 174.5 297 35.4
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.2e-41 172.9 299 34.1
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-40 170.6 293 35.2
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.9e-39 166.4 293 33.1
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.9e-39 166.4 297 34.0
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.4e-38 162.9 237 37.1
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.8e-37 160.2 284 32.4
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-35 154.8 256 35.2
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.7e-34 151.0 322 31.1
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.7e-34 151.0 301 31.9
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.1e-32 142.5 291 31.3
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-31 141.4 294 31.6
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.3e-29 132.5 345 27.8
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.7e-24 116.3 272 30.1
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 3.7e-21 106.7 287 26.8
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-15 87.0 63 58.7
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.5e-11 73.2 152 30.9
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.0e-10 72.0 74 37.8
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 3.3e-09 67.0 91 38.5
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 2.8e-08 63.9 41 61.0


User provided reference genes

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