Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 8.8e-120 434.1 303 100.0
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.1e-117 427.2 303 96.0
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.4e-112 410.2 310 95.2
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 5.6e-74 282.0 344 64.2
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 3.7e-70 269.2 309 68.0
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 1.9e-69 266.9 311 71.1
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 1.4e-64 250.8 304 64.8
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 1.8e-64 250.4 307 68.4
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 2.0e-63 246.9 309 54.4
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 1.4e-56 224.2 317 55.8
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 3.1e-56 223.0 302 55.6
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 9.9e-55 218.0 319 53.0
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 2.9e-54 216.5 313 54.3
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 2.9e-54 216.5 296 62.2
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 1.9e-53 213.8 310 59.4
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 2.7e-52 209.9 321 48.3
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 1.0e-51 208.0 315 49.8
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 2.3e-51 206.8 138 72.5
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 5.1e-51 205.7 138 71.7
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 5.1e-51 205.7 347 53.3
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 8.7e-51 204.9 311 48.2
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 1.9e-50 203.8 304 52.0
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.9e-50 203.8 301 48.8
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 3.3e-50 203.0 308 55.2
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 4.3e-50 202.6 343 58.3
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 5.6e-50 202.2 308 46.4
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.6e-50 202.2 305 49.5
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 5.6e-50 202.2 139 65.5
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 9.6e-50 201.4 138 68.1
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 9.6e-50 201.4 305 51.5
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 9.6e-50 201.4 303 48.5
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 2.1e-49 200.3 332 52.4
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 2.1e-49 200.3 339 38.9
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 2.8e-49 199.9 317 60.6
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 6.2e-49 198.7 310 47.7
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 3.1e-48 196.4 319 60.5
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 5.3e-48 195.7 319 44.8
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 6.9e-48 195.3 133 69.2
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 6.9e-48 195.3 324 55.6
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 1.2e-47 194.5 350 49.4
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 1.5e-47 194.1 125 72.0
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 2.6e-47 193.4 323 46.1
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 3.4e-47 193.0 304 45.7
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 7.6e-47 191.8 316 53.5
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 7.6e-47 191.8 304 50.7
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 1.7e-46 190.7 326 44.2
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 2.9e-46 189.9 300 46.3
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 3.8e-46 189.5 315 56.5
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 3.8e-46 189.5 125 69.6
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 4.9e-46 189.1 138 62.3
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 6.4e-46 188.7 113 74.3
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 1.1e-45 188.0 134 64.9
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 1.1e-45 188.0 121 70.2
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 1.1e-45 188.0 115 73.9
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 1.1e-45 188.0 124 67.7
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 1.1e-45 188.0 122 70.5
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 1.4e-45 187.6 137 69.3
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 1.9e-45 187.2 121 71.1
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 2.4e-45 186.8 120 72.5
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 3.2e-45 186.4 140 67.9
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 3.2e-45 186.4 327 51.1
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 3.2e-45 186.4 130 65.4
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 4.2e-45 186.0 124 68.5
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 4.2e-45 186.0 314 51.9
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 2.1e-44 183.7 138 66.7
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 2.1e-44 183.7 138 66.7
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 2.1e-44 183.7 138 66.7
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 2.1e-44 183.7 138 66.7
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 2.1e-44 183.7 138 66.7
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 2.7e-44 183.3 303 56.8
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.5e-44 183.0 136 67.6
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.6e-44 182.6 319 60.2
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 7.9e-44 181.8 313 48.9
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 1.0e-43 181.4 115 69.6
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 1.3e-43 181.0 294 53.1
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 1.3e-43 181.0 304 48.4
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 1.8e-43 180.6 303 52.5
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 3.9e-43 179.5 311 52.4
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 3.9e-43 179.5 350 51.4
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 3.9e-43 179.5 148 62.2
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 5.1e-43 179.1 307 51.5
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 8.7e-43 178.3 120 66.7
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 1.5e-42 177.6 131 67.2
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 1.9e-42 177.2 295 60.7
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 2.5e-42 176.8 128 68.0
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 2.5e-42 176.8 128 68.0
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 2.5e-42 176.8 128 68.0
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 2.5e-42 176.8 128 68.0
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 2.5e-42 176.8 128 68.0
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 2.5e-42 176.8 350 50.0
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 3.3e-42 176.4 285 45.3
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 3.3e-42 176.4 304 43.8
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 3.3e-42 176.4 316 53.5
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 3.3e-42 176.4 151 59.6
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 4.3e-42 176.0 310 49.0
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 4.3e-42 176.0 294 43.2
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 9.6e-42 174.9 325 54.5
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.6e-41 174.1 312 53.8
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 4.8e-41 172.6 342 57.6
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 4.8e-41 172.6 309 44.0
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 6.2e-41 172.2 144 63.2
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 1.1e-40 171.4 331 46.2
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.8e-40 170.6 316 49.4
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 1.8e-40 170.6 313 49.5
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 4.0e-40 169.5 304 49.0
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 5.3e-40 169.1 125 65.6
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 5.3e-40 169.1 133 65.4
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 6.9e-40 168.7 131 63.4
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 4.5e-39 166.0 300 44.7
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 7.6e-39 165.2 140 60.7
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 7.6e-39 165.2 147 61.2
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.7e-38 164.1 315 55.2
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.7e-38 164.1 126 64.3
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 1.7e-38 164.1 126 64.3
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 2.2e-38 163.7 331 42.0
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 6.4e-38 162.2 107 69.2
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 8.4e-38 161.8 312 53.2
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 1.9e-37 160.6 111 67.6
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 3.2e-37 159.8 123 65.0
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 5.5e-37 159.1 107 66.4
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.7e-36 156.8 130 60.0
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 7.9e-36 155.2 129 62.0
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 7.9e-36 155.2 130 60.8
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 1.3e-35 154.5 130 57.7
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 1.8e-35 154.1 131 62.6
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 2.3e-35 153.7 318 48.7
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 3.0e-35 153.3 276 46.4
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 6.7e-35 152.1 124 58.9
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.1e-34 151.4 127 59.1
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 1.9e-34 150.6 134 59.7
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.9e-34 150.6 317 45.4
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 3.3e-34 149.8 125 58.4
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 4.3e-34 149.4 118 61.9
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 7.4e-34 148.7 144 56.9
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 7.4e-34 148.7 115 60.9
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 2.1e-33 147.1 130 57.7
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 1.1e-32 144.8 111 61.3
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 1.8e-32 144.1 96 71.9
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 1.8e-32 144.1 113 66.4
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 2.4e-32 143.7 123 54.5
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 4.0e-32 142.9 140 53.6
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 5.3e-32 142.5 114 65.8
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 5.3e-32 142.5 114 65.8
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 5.3e-32 142.5 114 65.8
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 5.3e-32 142.5 147 53.1
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 6.9e-32 142.1 114 65.8
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 6.9e-32 142.1 124 58.9
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 6.9e-32 142.1 134 51.5
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 1.2e-31 141.4 111 60.4
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 1.2e-31 141.4 387 46.3
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 2.0e-31 140.6 136 54.4
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 2.6e-31 140.2 308 42.2
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 3.4e-31 139.8 124 58.1
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.7e-30 137.5 133 54.9
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 2.9e-30 136.7 119 58.0
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 2.5e-29 133.7 137 54.7
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 4.6e-28 129.4 134 50.0
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 6.0e-28 129.0 134 56.0
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 6.0e-28 129.0 121 57.0
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 7.9e-28 128.6 104 57.7
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.3e-27 127.9 114 54.4
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 3.0e-27 126.7 134 48.5
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 5.1e-27 125.9 127 54.3
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 5.1e-27 125.9 117 52.1
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 1.5e-26 124.4 109 55.0
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 1.4e-24 117.9 118 52.5
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 4.1e-24 116.3 89 57.3
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 2.6e-23 113.6 109 50.5
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 8.8e-19 98.6 109 49.5
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 8.2e-17 92.0 143 39.9
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 1.8e-16 90.9 106 45.3
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 9.1e-16 88.6 128 43.8
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 5.0e-14 82.8 109 43.1
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.9e-13 80.9 69 56.5
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.5e-13 80.5 119 39.5
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 1.2e-12 78.2 47 59.6
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 3.6e-12 76.6 124 39.5
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 4.7e-12 76.3 214 58.4
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 8.8e-11 72.0 114 38.6
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 7.4e-10 68.9 116 37.1
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.4e-08 64.7 114 34.2
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 4.1e-08 63.2 108 34.3
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 3.4e-07 60.1 54 59.3
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 2.9e-06 57.0 117 36.8


User provided reference genes

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