Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 3.0e-176 621.7 309 100.0
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 4.4e-175 617.8 309 99.4
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 3.3e-154 548.5 309 89.0
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 1.6e-100 370.2 310 67.7
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 4.6e-92 342.0 307 64.2
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 5.3e-72 275.4 323 52.9
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 1.0e-51 208.0 317 42.6
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 6.8e-51 205.3 284 43.7
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 7.0e-48 195.3 273 43.2
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 2.9e-46 189.9 282 40.1
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.2e-44 184.5 270 41.9
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 1.2e-44 184.5 275 41.1
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 1.5e-42 177.6 309 40.1
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.3e-41 174.5 281 39.5
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.3e-41 174.5 284 37.7
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.3e-41 174.5 281 39.5
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 3.7e-41 172.9 310 38.7
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 3.7e-41 172.9 292 37.3
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 4.9e-41 172.6 306 37.9
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 1.4e-40 171.0 282 39.4
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 4.1e-40 169.5 269 39.0
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 1.6e-39 167.5 273 39.2
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 2.7e-39 166.8 270 38.1
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 3.5e-39 166.4 269 39.4
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 3.5e-39 166.4 260 38.1
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.0e-38 164.9 186 47.3
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 1.3e-38 164.5 291 37.1
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 1.3e-38 164.5 308 37.7
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 1.7e-38 164.1 259 44.0
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.7e-38 164.1 296 37.5
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 3.0e-38 163.3 211 46.4
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 2.5e-37 160.2 264 39.4
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 4.3e-37 159.5 303 35.6
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 5.6e-37 159.1 308 34.7
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 1.2e-36 157.9 212 44.3
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 1.6e-36 157.5 246 39.4
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 2.1e-36 157.1 275 39.3
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 6.2e-36 155.6 219 42.5
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 6.2e-36 155.6 208 46.2
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 3.1e-35 153.3 271 35.8
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 4.0e-35 152.9 292 34.2
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 4.0e-35 152.9 254 37.4
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 1.2e-34 151.4 277 38.3
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 1.2e-34 151.4 175 46.3
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 1.5e-34 151.0 269 36.8
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 2.0e-34 150.6 269 37.2
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.4e-34 149.8 315 35.9
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 7.5e-34 148.7 322 37.0
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 1.7e-33 147.5 281 34.5
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.7e-33 147.5 215 43.7
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 2.2e-33 147.1 272 37.1
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 2.9e-33 146.7 209 38.3
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 6.4e-33 145.6 309 34.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 6.4e-33 145.6 314 35.7
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 8.3e-33 145.2 324 35.5
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 8.3e-33 145.2 279 34.8
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 1.4e-32 144.4 218 43.6
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 3.2e-32 143.3 310 33.9
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 4.1e-32 142.9 270 36.7
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 9.2e-32 141.7 222 41.4
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 1.6e-31 141.0 212 41.5
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 1.6e-31 141.0 212 41.5
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 2.7e-31 140.2 209 43.1
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 7.8e-31 138.7 176 44.9
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 7.8e-31 138.7 269 36.1
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 3.0e-30 136.7 263 32.3
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 3.9e-30 136.3 271 37.6
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 1.5e-29 134.4 163 46.6
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 1.9e-29 134.0 317 33.8
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 4.3e-29 132.9 168 44.6
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 7.3e-29 132.1 229 37.1
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 1.2e-28 131.3 197 40.6
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 8.1e-28 128.6 202 43.6
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 8.1e-28 128.6 260 35.4
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 3.1e-27 126.7 190 40.0
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.5e-26 124.4 305 32.5
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 2.0e-26 124.0 152 43.4
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 8.3e-25 118.6 167 41.3
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 3.2e-24 116.7 220 35.0
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.6e-23 114.4 217 31.8
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 4.6e-23 112.8 151 42.4
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 7.8e-23 112.1 194 36.6
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 1.1e-21 108.2 224 33.0
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 1.5e-21 107.8 216 33.3
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 5.6e-21 105.9 174 37.4
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 1.5e-18 97.8 167 36.5
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 2.2e-17 94.0 170 34.7
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 6.0e-15 85.9 135 39.3
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 2.4e-08 63.9 295 25.8
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.6e-07 61.2 144 29.2
BolC4t22040H Brassica oleracea HOM05D002705 ORTHO05D009765 1.7e-06 57.8 75 45.3


User provided reference genes

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