Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G038500 Gossypium raimondii HOM05D010331 ORTHO05D000001 7.3e-50 200.3 104 100.0
Gorai.010G168500 Gossypium raimondii HOM05D000006 ORTHO05D000001 5.3e-24 114.4 96 60.4
Gorai.006G054400 Gossypium raimondii HOM05D000006 ORTHO05D000001 2.6e-23 112.1 102 55.9
Gorai.005G090700 Gossypium raimondii HOM05D000006 ORTHO05D000001 6.5e-22 107.5 92 59.8
Gorai.002G177800 Gossypium raimondii HOM05D010331 ORTHO05D000001 1.1e-21 106.7 95 57.9
Gorai.001G222900 Gossypium raimondii HOM05D000006 ORTHO05D000001 9.3e-21 103.6 101 54.5
Gorai.011G188300 Gossypium raimondii HOM05D000006 ORTHO05D000001 7.9e-20 100.5 101 51.5
Gorai.004G068900 Gossypium raimondii HOM05D000006 ORTHO05D000001 1.0e-19 100.1 93 54.8
Gohir.D09G053350 Gossypium hirsutum HOM05D000006 ORTHO05D000001 5.1e-19 97.8 84 57.1
Gorai.002G106200 Gossypium raimondii HOM05D000006 ORTHO05D000001 5.1e-19 97.8 83 62.7
Gorai.011G093600 Gossypium raimondii HOM05D010331 ORTHO05D000001 1.5e-18 96.3 101 54.5
Gorai.003G168400 Gossypium raimondii HOM05D000006 ORTHO05D000001 1.3e-17 93.2 84 57.1
Gorai.001G251200 Gossypium raimondii HOM05D000006 ORTHO05D000001 2.4e-16 89.0 90 53.3
Gorai.008G081000 Gossypium raimondii HOM05D000006 ORTHO05D000001 2.0e-15 85.9 80 60.0
CiPaw.06G149500 Carya illinoinensis HOM05D017580 ORTHO05D000001 2.6e-15 85.5 95 48.4
Gorai.002G167600 Gossypium raimondii HOM05D000006 ORTHO05D000001 3.8e-14 81.6 78 53.8
Gorai.010G182200 Gossypium raimondii HOM05D000006 ORTHO05D000001 8.5e-14 80.5 80 55.0
Oeu012266.1 Olea europaea HOM05D000006 ORTHO05D000001 1.4e-13 79.7 100 42.0
MELO3C008402.2 Cucumis melo HOM05D000006 ORTHO05D000001 1.9e-13 79.3 89 44.9
TWI39G0759 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 3.2e-13 78.6 101 41.6
CANSAT21G1937 Cannabis sativa HOM05D000006 ORTHO05D000001 4.2e-13 78.2 86 43.0
Gorai.010G160800 Gossypium raimondii HOM05D000006 ORTHO05D000001 7.2e-13 77.4 73 57.5
QL05p038736 Quercus lobata HOM05D011350 ORTHO05D000001 9.4e-13 77.0 101 37.6
QL11p020175 Quercus lobata HOM05D011350 ORTHO05D000370 1.6e-12 76.3 101 38.6
QL04p019703 Quercus lobata HOM05D000006 ORTHO05D000001 2.1e-12 75.9 100 38.0
Oeu042177.1 Olea europaea HOM05D014089 ORTHO05D011268 3.6e-12 75.1 90 43.3
TWI53G0903 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 7.9e-12 73.9 88 40.9
ClCG09G015530 Citrullus lanatus HOM05D000027 ORTHO05D000066 1.0e-11 73.6 96 40.6
Oeu012880.1 Olea europaea HOM05D014089 ORTHO05D011268 1.4e-11 73.2 91 41.8
CANSAT54G1066 Cannabis sativa HOM05D000006 ORTHO05D000001 1.8e-11 72.8 100 40.0
CSS0028883 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 2.3e-11 72.4 96 40.6
CSS0039424 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 2.3e-11 72.4 96 40.6
CANSAT11G1292 Cannabis sativa HOM05D000006 ORTHO05D000001 2.3e-11 72.4 105 36.2
CANSAT80G1908 Cannabis sativa HOM05D000006 ORTHO05D000001 2.3e-11 72.4 96 36.5
Gorai.004G099700 Gossypium raimondii HOM05D000006 ORTHO05D000001 2.3e-11 72.4 88 47.7
Gorai.011G157900 Gossypium raimondii HOM05D000006 ORTHO05D000001 2.3e-11 72.4 96 41.7
Psat0s1379g0040 Pisum sativum HOM05D000006 ORTHO05D000001 2.3e-11 72.4 96 40.6
CSS0043824 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 3.0e-11 72.0 96 40.6
CANSAT01G1590 Cannabis sativa HOM05D000006 ORTHO05D000001 3.0e-11 72.0 99 37.4
CANSAT54G2260 Cannabis sativa HOM05D000006 ORTHO05D000001 3.0e-11 72.0 103 36.9
CANSAT64G0990 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-11 72.0 96 37.5
Gohir.D09G099050 Gossypium hirsutum HOM05D000006 ORTHO05D000001 3.9e-11 71.6 66 54.5
CANSAT35G0184 Cannabis sativa HOM05D000006 ORTHO05D000001 5.1e-11 71.2 100 39.0
CANSAT56G1128 Cannabis sativa HOM05D000006 ORTHO05D000001 5.1e-11 71.2 100 39.0
CANSAT56G2615 Cannabis sativa HOM05D000006 ORTHO05D000001 5.1e-11 71.2 100 39.0
CSS0008448 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 8.8e-11 70.5 96 39.6
Gorai.011G153600 Gossypium raimondii HOM05D010331 ORTHO05D000001 1.1e-10 70.1 74 45.9
CSS0050272 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.5e-10 69.7 96 39.6
CSS0033845 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 2.0e-10 69.3 96 39.6
CSS0004288 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 3.3e-10 68.6 96 38.5
CANSAT78G0422 Cannabis sativa HOM05D000006 ORTHO05D000001 3.3e-10 68.6 96 37.5
CANSAT56G1815 Cannabis sativa HOM05D000006 ORTHO05D000001 4.3e-10 68.2 96 36.5
CANSAT80G0902 Cannabis sativa HOM05D000006 ORTHO05D000001 4.3e-10 68.2 101 35.6
TWI09G0578 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 4.3e-10 68.2 83 42.2
CANSAT80G1572 Cannabis sativa HOM05D000006 ORTHO05D000001 9.7e-10 67.0 99 36.4
TWI81G1093 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 9.7e-10 67.0 98 39.8
CSS0038264 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.7e-09 66.2 93 39.8
CANSAT21G1245 Cannabis sativa HOM05D000006 ORTHO05D000001 1.7e-09 66.2 91 40.7
CSS0042465 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 2.2e-09 65.9 89 39.3
Gorai.012G106600 Gossypium raimondii HOM05D014089 ORTHO05D000001 2.2e-09 65.9 58 53.4
Gorai.002G159800 Gossypium raimondii HOM05D014089 ORTHO05D000001 2.8e-09 65.5 69 50.7
TWI08G0001 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 2.8e-09 65.5 98 38.8
TWI29G0001 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 2.8e-09 65.5 98 38.8
TWI72G0001 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 2.8e-09 65.5 98 38.8
TWI82G0001 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 2.8e-09 65.5 98 38.8
TWI82G0002 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 2.8e-09 65.5 98 38.8
TWI82G0003 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 2.8e-09 65.5 98 38.8
TWI84G0001 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 2.8e-09 65.5 98 38.8
MELO3C029602.2 Cucumis melo HOM05D000006 ORTHO05D000001 4.8e-09 64.7 103 31.1
Gorai.001G230700 Gossypium raimondii HOM05D000006 ORTHO05D000001 4.8e-09 64.7 70 52.9
Atru.chr8.980 Acer truncatum HOM05D000006 ORTHO05D000001 1.4e-08 63.2 78 38.5
CANSAT56G1315 Cannabis sativa HOM05D000006 ORTHO05D000001 1.4e-08 63.2 96 36.5
Sopen07g008970 Solanum pennellii HOM05D000006 ORTHO05D000001 1.4e-08 63.2 100 37.0
vmacro05628 Vaccinium macrocarpon HOM05D000006 ORTHO05D000001 1.4e-08 63.2 90 33.3
QL04p020058 Quercus lobata HOM05D011350 ORTHO05D000001 1.8e-08 62.8 89 36.0
Gorai.006G116000 Gossypium raimondii HOM05D010331 ORTHO05D000001 2.4e-08 62.4 66 51.5
Sopen02g014440 Solanum pennellii HOM05D000006 ORTHO05D000001 2.4e-08 62.4 100 33.0
TWI73G1285 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 2.4e-08 62.4 87 39.1
MELO3C018244.2 Cucumis melo HOM05D000006 ORTHO05D000001 3.1e-08 62.0 79 39.2
TWI07G0001 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 3.1e-08 62.0 88 40.9
RcHm_v2.0_Chr3g0462591 Rosa chinensis HOM05D000006 ORTHO05D000001 4.1e-08 61.6 91 36.3
TPR.G33006 Trifolium pratense HOM05D000006 ORTHO05D000001 5.3e-08 61.2 78 42.3
CSS0030083 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 6.9e-08 60.8 89 40.4
CANSAT25G2878 Cannabis sativa HOM05D010331 ORTHO05D000001 6.9e-08 60.8 91 35.2
RcHm_v2.0_Chr3g0456701 Rosa chinensis HOM05D000006 ORTHO05D000001 6.9e-08 60.8 91 33.0
RcHm_v2.0_Chr7g0183661 Rosa chinensis HOM05D000109 ORTHO05D000001 6.9e-08 60.8 91 35.2
Sopen05g026170 Solanum pennellii HOM05D000006 ORTHO05D000001 6.9e-08 60.8 104 34.6
AL123U10020 Arabidopsis lyrata HOM05D012795 ORTHO05D014047 9.1e-08 60.5 87 39.1
Gorai.005G106200 Gossypium raimondii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 63 46.0
QL09p034643 Quercus lobata HOM05D000273 ORTHO05D000198 9.1e-08 60.5 75 40.0
Rhsim07G0003700 Rhododendron simsii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 107 33.6
Sopen02g010910 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 102 33.3
Sopen02g018340 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 100 33.0
Sopen03g006660 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 102 33.3
Sopen04g001900 Solanum pennellii HOM05D001270 ORTHO05D001099 9.1e-08 60.5 102 33.3
Sopen06g011700 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 102 33.3
Sopen07g012170 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 102 33.3
Sopen09g019260 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 102 33.3
Sopen09g025630 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 102 33.3
Sopen10g006410 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 102 33.3
Sopen11g022050 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 102 33.3
Sopen12g017800 Solanum pennellii HOM05D000006 ORTHO05D000001 9.1e-08 60.5 102 33.3
Duzib168G1730 Durio zibethinus HOM05D000006 ORTHO05D000001 1.2e-07 60.1 96 34.4
Sopen10g018180 Solanum pennellii HOM05D003120 ORTHO05D000001 1.2e-07 60.1 100 31.0
PSO349G0024 Papaver somniferum HOM05D000002 ORTHO05D000001 2.0e-07 59.3 83 37.3
Sopen07g022960 Solanum pennellii HOM05D000006 ORTHO05D000001 2.0e-07 59.3 100 33.0
HanXRQChr03g0067731 Helianthus annuus HOM05D000002 ORTHO05D000001 2.6e-07 58.9 97 34.0
MBI12_g47551_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D000001 3.4e-07 58.5 76 38.2
MELO3C032096.2 Cucumis melo HOM05D000006 ORTHO05D000001 4.5e-07 58.2 102 32.4
FvH4_6g07332 Fragaria vesca HOM05D000002 ORTHO05D000001 4.5e-07 58.2 88 33.0
RcHm_v2.0_Chr4g0421211 Rosa chinensis HOM05D000006 ORTHO05D000001 4.5e-07 58.2 84 34.5
Sopen06g032590 Solanum pennellii HOM05D000006 ORTHO05D000695 4.5e-07 58.2 102 32.4
Sopen06g032610 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-07 58.2 102 32.4
Atru.chr12.2495 Acer truncatum HOM05D000006 ORTHO05D000001 5.9e-07 57.8 98 29.6
CANSAT21G1135 Cannabis sativa HOM05D000002 ORTHO05D000001 5.9e-07 57.8 98 33.7
Sopen06g032620 Solanum pennellii HOM05D000537 ORTHO05D000415 5.9e-07 57.8 102 33.3
FvH4_5g12471 Fragaria vesca HOM05D000002 ORTHO05D000001 7.7e-07 57.4 96 30.2
Sopen09g010550 Solanum pennellii HOM05D000006 ORTHO05D000001 7.7e-07 57.4 98 32.7
TWI60G1612 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 7.7e-07 57.4 106 33.0
ClCG07G007380 Citrullus lanatus HOM05D000006 ORTHO05D000001 1.0e-06 57.0 93 35.5
Sopen05g028060 Solanum pennellii HOM05D000006 ORTHO05D000001 1.0e-06 57.0 91 30.8
Sopen06g011610 Solanum pennellii HOM05D000006 ORTHO05D000001 1.0e-06 57.0 104 34.6
CANSAT35G1555 Cannabis sativa HOM05D000002 ORTHO05D000001 1.3e-06 56.6 102 31.4
CANSAT54G0592 Cannabis sativa HOM05D000002 ORTHO05D000001 1.3e-06 56.6 99 32.3
MELO3C028877.2 Cucumis melo HOM05D003454 ORTHO05D000001 1.3e-06 56.6 95 30.5
MD17G1077400 Malus domestica HOM05D000002 ORTHO05D000001 1.3e-06 56.6 95 30.5
AUR62007698 Chenopodium quinoa HOM05D000087 ORTHO05D002585 1.7e-06 56.2 100 30.0
PSO675G7659 Papaver somniferum HOM05D000002 ORTHO05D000001 1.7e-06 56.2 83 36.1
RcHm_v2.0_Chr6g0259691 Rosa chinensis HOM05D000002 ORTHO05D000001 1.7e-06 56.2 96 30.2
Sopen08g018630 Solanum pennellii HOM05D000006 ORTHO05D000001 1.7e-06 56.2 103 33.0
CSS0040971 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-06 55.8 83 34.9
MD07G1028600 Malus domestica HOM05D000002 ORTHO05D000001 2.2e-06 55.8 96 29.2
PSO063G3813 Papaver somniferum HOM05D000002 ORTHO05D000001 2.2e-06 55.8 83 36.1
SHI03433 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-06 55.8 83 33.7
SHI18478 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-06 55.8 83 32.5
Sopen11g025330 Solanum pennellii HOM05D000006 ORTHO05D000001 2.2e-06 55.8 103 33.0
Atru.chr3.1940 Acer truncatum HOM05D000006 ORTHO05D000001 2.9e-06 55.5 98 28.6
CSS0020427 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-06 55.5 83 34.9
SHI28427 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-06 55.5 83 32.5
Hund15273 Selenicereus undatus HOM05D000006 ORTHO05D000001 2.9e-06 55.5 103 29.1
FvH4_7g10731 Fragaria vesca HOM05D000006 ORTHO05D000001 3.8e-06 55.1 102 29.4
Gorai.008G060900 Gossypium raimondii HOM05D014089 ORTHO05D000001 3.8e-06 55.1 51 54.9
Sopen01g006550 Solanum pennellii HOM05D000006 ORTHO05D000695 3.8e-06 55.1 102 30.4
Sopen05g008110 Solanum pennellii HOM05D000006 ORTHO05D000001 3.8e-06 55.1 104 32.7
ECA232G1928 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-06 54.7 97 33.0
ECA233G3173 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-06 54.7 86 31.4
ECA238G1149 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-06 54.7 86 31.4
ECA240G2946 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-06 54.7 86 31.4
ECA248G1039 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-06 54.7 86 31.4
FvH4_7g29024 Fragaria vesca HOM05D000002 ORTHO05D000001 5.0e-06 54.7 87 31.0
PSO017G0986 Papaver somniferum HOM05D000002 ORTHO05D000001 5.0e-06 54.7 83 37.3
PSO151G0096 Papaver somniferum HOM05D000002 ORTHO05D000001 5.0e-06 54.7 110 29.1
RcHm_v2.0_Chr5g0064041 Rosa chinensis HOM05D000002 ORTHO05D000001 5.0e-06 54.7 96 30.2
SHI00870 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-06 54.7 83 31.3
Sopen11g021920 Solanum pennellii HOM05D000006 ORTHO05D000001 5.0e-06 54.7 88 31.8
ClCG11G009740 Citrullus lanatus HOM05D000027 ORTHO05D000001 6.5e-06 54.3 65 44.6
MD09G1044700 Malus domestica HOM05D000002 ORTHO05D000001 6.5e-06 54.3 96 29.2
Sopen05g025430 Solanum pennellii HOM05D000006 ORTHO05D000001 6.5e-06 54.3 101 34.7
Sopen09g011370 Solanum pennellii HOM05D000004 ORTHO05D000002 6.5e-06 54.3 100 30.0
CSS0016795 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.5e-06 53.9 96 33.3
MELO3C003289.2 Cucumis melo HOM05D000006 ORTHO05D000001 8.5e-06 53.9 86 33.7
FvH4_3g21021 Fragaria vesca HOM05D000002 ORTHO05D000001 8.5e-06 53.9 88 31.8
FvH4_3g21841 Fragaria vesca HOM05D014123 ORTHO05D000001 8.5e-06 53.9 100 28.0
FvH4_3g37482 Fragaria vesca HOM05D014123 ORTHO05D000001 8.5e-06 53.9 100 28.0
FvH4_4g14651 Fragaria vesca HOM05D000006 ORTHO05D000001 8.5e-06 53.9 100 28.0
Hma1.2p1_0820F.1_g223995 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.5e-06 53.9 75 37.3
Hma1.2p1_0820F.1_g224020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.5e-06 53.9 75 37.3
PSO017G5132 Papaver somniferum HOM05D000002 ORTHO05D000001 8.5e-06 53.9 93 33.3
SHI25860 Sapria himalayana HOM05D000002 ORTHO05D000001 8.5e-06 53.9 83 31.3


User provided reference genes

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