Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 2.2e-73 278.9 142 100.0
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 7.9e-47 190.7 102 98.0
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 9.1e-43 177.2 100 93.0
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 3.3e-16 89.0 76 64.5
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 7.2e-16 87.8 63 73.0
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 9.5e-16 87.4 86 60.5
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 9.5e-16 87.4 67 76.1
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 1.2e-15 87.0 70 60.0
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 2.8e-15 85.9 72 61.1
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 4.7e-15 85.1 69 60.9
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 6.1e-15 84.7 72 66.7
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 8.0e-15 84.3 69 62.3
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 8.0e-15 84.3 65 61.5
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 1.8e-14 83.2 65 60.0
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 2.3e-14 82.8 65 70.8
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 2.3e-14 82.8 61 70.5
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 3.0e-14 82.4 69 59.4
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 3.0e-14 82.4 68 66.2
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 5.2e-14 81.6 78 62.8
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 8.9e-14 80.9 70 58.6
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 1.5e-13 80.1 70 60.0
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 2.0e-13 79.7 73 57.5
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 4.4e-13 78.6 59 67.8
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 7.5e-13 77.8 74 58.1
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 7.5e-13 77.8 70 60.0
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 9.8e-13 77.4 65 60.0
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.7e-12 76.6 61 67.2
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 1.7e-12 76.6 73 54.8
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 2.2e-12 76.3 64 62.5
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 3.7e-12 75.5 61 65.6
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 3.7e-12 75.5 63 66.7
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.9e-12 75.1 61 65.6
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 4.9e-12 75.1 60 63.3
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 8.3e-12 74.3 58 67.2
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 8.3e-12 74.3 58 67.2
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 8.3e-12 74.3 73 57.5
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 8.3e-12 74.3 75 57.3
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 1.1e-11 73.9 55 65.5
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 1.1e-11 73.9 49 73.5
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 1.4e-11 73.6 49 73.5
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 1.4e-11 73.6 65 58.5
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 1.8e-11 73.2 49 73.5
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 1.8e-11 73.2 65 58.5
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 1.8e-11 73.2 58 63.8
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 2.4e-11 72.8 59 61.0
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 4.1e-11 72.0 60 63.3
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 9.2e-11 70.9 61 59.0
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 1.2e-10 70.5 59 62.7
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 1.6e-10 70.1 53 67.9
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 2.7e-10 69.3 53 66.0
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 3.5e-10 68.9 52 65.4
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 3.5e-10 68.9 50 68.0
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 4.5e-10 68.6 53 64.2
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 4.5e-10 68.6 73 50.7
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 4.5e-10 68.6 53 62.3
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 5.0e-09 65.1 52 61.5
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 6.6e-09 64.7 70 47.1
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 6.6e-09 64.7 53 60.4
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 8.6e-09 64.3 50 62.0
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 8.6e-09 64.3 56 55.4
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 1.1e-08 63.9 54 61.1
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 1.5e-08 63.5 52 63.5
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 2.5e-08 62.8 47 59.6
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 5.6e-08 61.6 63 54.0
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 7.3e-08 61.2 50 60.0
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 7.3e-08 61.2 42 69.0
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 7.3e-08 61.2 54 57.4
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 9.5e-08 60.8 42 66.7
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 9.5e-08 60.8 47 61.7
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 1.8e-06 56.6 44 63.6
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 2.3e-06 56.2 55 54.5
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 3.0e-06 55.8 54 50.0
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 3.0e-06 55.8 54 50.0
arahy.Tifrunner.gnm1.ann1.7FYT6C Arachis hypogaea HOM05D009255 ORTHO05D011239 5.2e-06 55.1 60 50.0
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 5.2e-06 55.1 54 50.0
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 5.2e-06 55.1 54 50.0
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 5.2e-06 55.1 52 51.9
arahy.Tifrunner.gnm1.ann1.CGQ11J Arachis hypogaea HOM05D009255 ORTHO05D011239 6.8e-06 54.7 60 50.0


User provided reference genes

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