Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.0e-42 175.3 82 100.0
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.0e-42 175.3 82 100.0
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.9e-41 171.4 82 97.6
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 2.4e-27 125.2 81 75.3
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.4e-26 121.3 81 71.6
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.2e-25 118.6 81 70.4
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.2e-25 118.6 81 70.4
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.6e-23 112.5 77 70.1
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.9e-23 110.2 82 67.1
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 7.9e-23 110.2 82 67.1
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.0e-22 109.8 81 66.7
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.8e-20 101.7 78 64.1
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.0e-19 97.8 74 63.5
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 2.0e-18 95.5 77 64.9
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.0e-17 93.2 82 59.8
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.0e-17 93.2 80 57.5
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 2.2e-17 92.0 78 57.7
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.2e-17 92.0 76 61.8
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 3.8e-17 91.3 81 55.6
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 8.4e-17 90.1 82 56.1
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.9e-16 89.0 76 59.2
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 2.5e-16 88.6 95 52.6
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.5e-16 88.6 95 52.6
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.5e-16 88.6 95 52.6
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.5e-16 88.6 81 56.8
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 5.5e-16 87.4 95 51.6
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 7.1e-16 87.0 81 55.6
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 9.3e-16 86.7 82 56.1
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 9.3e-16 86.7 83 57.8
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.6e-15 85.9 85 54.1
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.1e-15 85.5 76 59.2
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 2.1e-15 85.5 81 58.0
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.7e-15 85.1 76 61.8
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 4.6e-15 84.3 54 72.2
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 4.6e-15 84.3 84 52.4
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 1.0e-14 83.2 76 55.3
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.0e-14 83.2 83 55.4
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.8e-14 82.4 56 67.9
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.8e-14 82.4 85 56.5
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 3.0e-14 81.6 79 55.7
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 5.1e-14 80.9 73 58.9
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.5e-13 79.3 83 54.2
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 2.5e-13 78.6 48 72.9
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.3e-13 78.2 80 53.8
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 3.3e-13 78.2 74 50.0
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 3.3e-13 78.2 82 57.3
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.4e-13 77.0 74 48.6
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 9.6e-13 76.6 68 51.5
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 9.6e-13 76.6 68 51.5
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 9.6e-13 76.6 68 51.5
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 9.6e-13 76.6 68 51.5
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.3e-12 76.3 71 54.9
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 3.7e-12 74.7 59 55.9
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 4.8e-12 74.3 48 68.8
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 6.2e-12 73.9 81 50.6
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.1e-11 73.2 69 53.6
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-11 72.4 76 46.1
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 1.8e-11 72.4 76 46.1
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 2.4e-11 72.0 76 46.1
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-11 72.0 76 46.1
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 2.4e-11 72.0 76 46.1
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 3.1e-11 71.6 46 69.6
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 4.0e-11 71.2 59 54.2
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 4.0e-11 71.2 74 45.9
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 4.0e-11 71.2 82 46.3
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 1.5e-10 69.3 81 46.9
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 2.0e-10 68.9 79 46.8
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-10 68.9 84 51.2
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.6e-10 68.6 76 48.7
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 3.4e-10 68.2 71 49.3
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 4.5e-10 67.8 74 48.6
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 4.5e-10 67.8 74 48.6
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-09 66.2 71 49.3
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-09 66.2 71 49.3
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-09 66.2 71 49.3
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-09 66.2 71 49.3
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.3e-09 66.2 71 49.3
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.3e-09 66.2 77 48.1
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-09 65.9 79 48.1
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-09 65.5 72 50.0
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 2.2e-09 65.5 72 50.0
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 2.2e-09 65.5 72 50.0
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 5.0e-09 64.3 73 47.9
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 6.5e-09 63.9 74 44.6
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 6.5e-09 63.9 74 44.6
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 8.4e-09 63.5 75 44.0
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 8.4e-09 63.5 78 47.4
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 8.4e-09 63.5 61 54.1
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-08 63.2 74 44.6
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-08 63.2 74 44.6
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 1.1e-08 63.2 74 44.6
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.4e-08 62.8 73 47.9
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 2.5e-08 62.0 84 41.7
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 2.5e-08 62.0 70 47.1
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 3.2e-08 61.6 76 46.1
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.2e-08 61.2 70 50.0
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 9.3e-08 60.1 73 46.6
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.2e-07 59.7 34 67.6
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 1.2e-07 59.7 72 48.6
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.1e-07 58.9 73 46.6
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.7e-07 58.5 80 45.0
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.7e-07 58.5 92 43.5
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 3.5e-07 58.2 65 50.8
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 6.1e-07 57.4 82 43.9
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.1e-07 57.4 69 42.0
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 6.1e-07 57.4 73 39.7
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 7.9e-07 57.0 70 45.7
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.3e-06 56.2 97 39.2
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.3e-06 56.2 72 40.3
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.8e-06 55.8 73 46.6
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 2.3e-06 55.5 82 39.0
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 3.0e-06 55.1 97 40.2
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 3.0e-06 55.1 67 44.8
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 5.1e-06 54.3 27 77.8
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 5.1e-06 54.3 27 77.8
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 5.1e-06 54.3 27 77.8
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 5.1e-06 54.3 67 44.8
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 6.7e-06 53.9 67 41.8
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 6.7e-06 53.9 67 41.8
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 6.7e-06 53.9 27 77.8


User provided reference genes

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