Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G030700 Gossypium raimondii HOM05D001361 ORTHO05D025695 1.5e-47 192.6 101 100.0
Gohir.D11G231540 Gossypium hirsutum HOM05D001361 ORTHO05D025695 2.9e-43 178.3 101 95.0
Gohir.D04G027950 Gossypium hirsutum HOM05D001361 ORTHO05D002529 4.6e-41 171.0 91 97.8
Gohir.D02G057300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 2.3e-24 115.5 100 69.0
Gohir.D05G291300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 2.3e-24 115.5 100 69.0
Gohir.D08G096500 Gossypium hirsutum HOM05D001361 ORTHO05D025695 5.1e-24 114.4 100 68.0
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 8.8e-24 113.6 100 68.0
Gohir.D04G022372 Gossypium hirsutum HOM05D001361 ORTHO05D025695 4.3e-23 111.3 101 67.3
Gorai.006G051200 Gossypium raimondii HOM05D001361 ORTHO05D025695 4.3e-23 111.3 100 67.0
Gohir.D04G084248 Gossypium hirsutum HOM05D001361 ORTHO05D002529 7.4e-23 110.5 100 66.0
Gohir.A13G072100 Gossypium hirsutum HOM05D001361 ORTHO05D002529 5.0e-19 97.8 91 65.9
Gohir.D13G067800 Gossypium hirsutum HOM05D001361 ORTHO05D002529 5.0e-19 97.8 91 65.9
Gorai.013G077300 Gossypium raimondii HOM05D001361 ORTHO05D002529 5.0e-19 97.8 91 65.9
Duzib251G0880 Durio zibethinus HOM05D001361 ORTHO05D002529 1.4e-18 96.3 91 63.7
Thecc.02G354100 Theobroma cacao HOM05D001361 ORTHO05D002529 2.1e-17 92.4 91 60.4
Gohir.A12G166300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 4.7e-17 91.3 91 59.3
Gohir.D12G169800 Gossypium hirsutum HOM05D001361 ORTHO05D002529 4.7e-17 91.3 91 59.3
Duzib248G0766 Durio zibethinus HOM05D001361 ORTHO05D002529 6.1e-17 90.9 91 59.3
Manes.01G189500 Manihot esculenta HOM05D001361 ORTHO05D002529 1.4e-13 79.7 88 55.7
Gorai.008G182400 Gossypium raimondii HOM05D001361 ORTHO05D002529 2.4e-13 79.0 91 54.9
ClCG01G018850 Citrullus lanatus HOM05D001361 ORTHO05D002529 3.1e-13 78.6 95 53.7
Cpa.g.c28586.2 Carica papaya HOM05D001361 ORTHO05D002529 4.1e-13 78.2 95 51.6
A08p27700 Brassica napus HOM05D001361 ORTHO05D002529 7.0e-13 77.4 93 49.5
C08p22610 Brassica napus HOM05D001361 ORTHO05D002529 7.0e-13 77.4 93 49.5
BolC8t49899H Brassica oleracea HOM05D001361 ORTHO05D002529 7.0e-13 77.4 93 49.5
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-12 76.6 93 49.5
Eucgr.B03413 Eucalyptus grandis HOM05D001361 ORTHO05D002529 1.2e-12 76.6 95 50.5
QL03p065510 Quercus lobata HOM05D001361 ORTHO05D002529 1.2e-12 76.6 93 52.7
TWI18G1247 Tripterygium wilfordii HOM05D001361 ORTHO05D002529 1.2e-12 76.6 95 50.5
GSVIVG01020065001 Vitis vinifera HOM05D001361 ORTHO05D002529 1.2e-12 76.6 95 52.6
Manes.05G097501 Manihot esculenta HOM05D001361 ORTHO05D002529 1.6e-12 76.3 93 50.5
Sc04g0008420 Simmondsia chinensis HOM05D001361 ORTHO05D002529 1.6e-12 76.3 88 54.5
BcaC05g26354 Brassica carinata HOM05D001361 ORTHO05D002529 2.6e-12 75.5 89 50.6
C05p23790 Brassica napus HOM05D001361 ORTHO05D002529 2.6e-12 75.5 89 50.6
BolC5t31098H Brassica oleracea HOM05D001361 ORTHO05D002529 2.6e-12 75.5 89 50.6
MELO3C007764.2 Cucumis melo HOM05D001361 ORTHO05D002529 2.6e-12 75.5 88 53.4
CsaV3_6G045510 Cucumis sativus L. HOM05D001361 ORTHO05D002529 3.5e-12 75.1 88 53.4
Cfa009024 Carpinus fangiana HOM05D001361 ORTHO05D002529 4.5e-12 74.7 92 47.8
Haze_12055 Corylus avellana HOM05D001361 ORTHO05D002529 4.5e-12 74.7 92 47.8
Psat2g144360 Pisum sativum HOM05D001361 ORTHO05D002529 5.9e-12 74.3 95 46.3
Atru.chr11.1898 Acer truncatum HOM05D001361 ORTHO05D002529 7.7e-12 73.9 87 50.6
AT1G27000 Arabidopsis thaliana HOM05D001361 ORTHO05D002529 7.7e-12 73.9 95 48.4
A09p40430 Brassica napus HOM05D001361 ORTHO05D002529 7.7e-12 73.9 89 50.6
BraA08t34705Z Brassica rapa HOM05D001361 ORTHO05D002529 7.7e-12 73.9 93 48.4
BraA09t39539Z Brassica rapa HOM05D001361 ORTHO05D002529 7.7e-12 73.9 89 50.6
Sp1g21790 Schrenkiella parvula HOM05D001361 ORTHO05D002529 7.7e-12 73.9 95 48.4
PGR119G1577 Punica granatum HOM05D001361 ORTHO05D002529 1.0e-11 73.6 88 52.3
EL10Ac6g13158 Beta vulgaris HOM05D001361 ORTHO05D002529 1.3e-11 73.2 92 46.7
Thhalv10008298m.g Eutrema salsugineum HOM05D001361 ORTHO05D002529 1.3e-11 73.2 95 48.4
PGR102G2437 Punica granatum HOM05D001361 ORTHO05D002529 1.3e-11 73.2 95 48.4
CSS0023699 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.7e-11 72.8 88 51.1
CSS0049047 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.7e-11 72.8 88 51.1
Glyma.01G042800 Glycine max HOM05D001361 ORTHO05D002529 1.7e-11 72.8 83 51.8
vmacro01232 Vaccinium macrocarpon HOM05D001361 ORTHO05D002529 1.7e-11 72.8 93 50.5
Carub.0001s2397 Capsella rubella HOM05D001361 ORTHO05D002529 2.2e-11 72.4 88 50.0
Lj2g0009692 Lotus japonicus HOM05D001361 ORTHO05D002529 2.2e-11 72.4 84 48.8
Phvul.002G065900 Phaseolus vulgaris HOM05D001361 ORTHO05D002529 2.9e-11 72.0 84 48.8
Potri.010G092700 Populus trichocarpa HOM05D001361 ORTHO05D002529 2.9e-11 72.0 88 48.9
Aa31LG7G8150 Aethionema arabicum HOM05D001361 ORTHO05D002529 3.8e-11 71.6 95 47.4
SGA_v2.0_scaffold54G19444 Striga asiatica HOM05D001361 ORTHO05D002529 3.8e-11 71.6 94 46.8
AL5G11920 Arabidopsis lyrata HOM05D001361 ORTHO05D002529 5.0e-11 71.2 90 48.9
Carub.0005s0164 Capsella rubella HOM05D001361 ORTHO05D002529 5.0e-11 71.2 85 49.4
CiPaw.06G081200 Carya illinoinensis HOM05D001361 ORTHO05D002529 5.0e-11 71.2 84 47.6
Hma1.2p1_0341F.1_g130600 Hydrangea macrophylla HOM05D001361 ORTHO05D002529 5.0e-11 71.2 88 48.9
Lalb_Chr04g0256311 Lupinus albus HOM05D001361 ORTHO05D002529 5.0e-11 71.2 84 47.6
AT2G02730 Arabidopsis thaliana HOM05D001361 ORTHO05D002529 6.5e-11 70.9 90 48.9
Sp2g13840 Schrenkiella parvula HOM05D001361 ORTHO05D002529 6.5e-11 70.9 90 46.7
Actinidia08216 Actinidia chinensis HOM05D001361 ORTHO05D002529 8.5e-11 70.5 93 47.3
ATR1120G156 Amborella trichopoda HOM05D001361 ORTHO05D002529 8.5e-11 70.5 92 48.9
AL1G38520 Arabidopsis lyrata HOM05D001361 ORTHO05D002529 8.5e-11 70.5 95 46.3
Oeu017067.2 Olea europaea HOM05D001361 ORTHO05D002529 8.5e-11 70.5 95 48.4
Potri.008G149000 Populus trichocarpa HOM05D001361 ORTHO05D002529 8.5e-11 70.5 88 50.0
Sabra10G0050900 Salix brachista HOM05D001361 ORTHO05D002529 8.5e-11 70.5 88 47.7
BcaB07g30695 Brassica carinata HOM05D001361 ORTHO05D002529 1.1e-10 70.1 90 46.7
CSS0025195 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.1e-10 70.1 88 48.9
CARHR024910 Cardamine hirsuta HOM05D001361 ORTHO05D002529 1.1e-10 70.1 89 47.2
Ca_04747_v3 Cicer arietinum L. HOM05D001361 ORTHO05D002529 1.1e-10 70.1 84 52.4
Thhalv10004758m.g Eutrema salsugineum HOM05D001361 ORTHO05D002529 1.1e-10 70.1 90 46.7
Dinv44088 Davidia involucrata HOM05D001361 ORTHO05D002529 1.5e-10 69.7 95 49.5
VMungo1215G2637 Vigna mungo HOM05D001361 ORTHO05D002529 1.5e-10 69.7 87 46.0
BcaC04g21517 Brassica carinata HOM05D001361 ORTHO05D002529 1.9e-10 69.3 91 44.0
C09p30830 Brassica napus HOM05D001361 ORTHO05D002529 1.9e-10 69.3 91 44.0
BolC9t55945H Brassica oleracea HOM05D001361 ORTHO05D002529 1.9e-10 69.3 91 44.0
A09p23940 Brassica napus HOM05D001361 ORTHO05D002529 3.2e-10 68.6 91 44.0
BcaC06g31220 Brassica carinata HOM05D001361 ORTHO05D002529 4.2e-10 68.2 85 45.9
CiPaw.05G139100 Carya illinoinensis HOM05D001361 ORTHO05D002529 4.2e-10 68.2 93 47.3
Dinv43649 Davidia involucrata HOM05D001361 ORTHO05D002529 4.2e-10 68.2 95 47.4
Glyma.02G020800 Glycine max HOM05D001361 ORTHO05D002529 4.2e-10 68.2 83 49.4
TPR.G18467 Trifolium pratense HOM05D001361 ORTHO05D002529 4.2e-10 68.2 85 49.4
Aa31LG2G7530 Aethionema arabicum HOM05D001361 ORTHO05D002529 5.5e-10 67.8 90 45.6
CARHR145160 Cardamine hirsuta HOM05D001361 ORTHO05D002529 5.5e-10 67.8 90 46.7
Nn4g23060 Nelumbo nucifera HOM05D001361 ORTHO05D002529 5.5e-10 67.8 95 45.3
BraA06t27237Z Brassica rapa HOM05D001361 ORTHO05D002529 7.2e-10 67.4 85 45.9
Migut.A01170 Erythranthe guttata HOM05D001361 ORTHO05D002529 9.4e-10 67.0 87 43.7
Medtr5g038550 Medicago truncatula HOM05D001361 ORTHO05D002529 9.4e-10 67.0 53 66.0
Sed0011652 Sechium edule HOM05D001361 ORTHO05D002529 9.4e-10 67.0 95 45.3
arahy.Tifrunner.gnm1.ann1.KTR52G Arachis hypogaea HOM05D001361 ORTHO05D002529 1.2e-09 66.6 84 46.4
arahy.Tifrunner.gnm1.ann1.PUF87X Arachis hypogaea HOM05D001361 ORTHO05D002529 1.6e-09 66.2 84 46.4
arahy.Tifrunner.gnm1.ann1.S44JZV Arachis hypogaea HOM05D001361 ORTHO05D002529 1.6e-09 66.2 84 46.4
MD13G1078200 Malus domestica HOM05D001361 ORTHO05D002529 1.6e-09 66.2 92 48.9
Nitab4.5_0000411g0030 Nicotiana tabacum HOM05D001361 ORTHO05D002529 1.6e-09 66.2 92 43.5
Gohir.D10G160200 Gossypium hirsutum HOM05D001361 ORTHO05D005849 2.1e-09 65.9 74 56.8
BcaC06g34044 Brassica carinata HOM05D001361 ORTHO05D002529 2.7e-09 65.5 85 44.7
C07p33340 Brassica napus HOM05D001361 ORTHO05D002529 2.7e-09 65.5 85 44.7
BolC7t43844H Brassica oleracea HOM05D001361 ORTHO05D002529 2.7e-09 65.5 85 44.7
COL.COLO4_23041 Corchorus olitorius HOM05D001361 ORTHO05D002529 2.7e-09 65.5 42 69.0
Rhsim12G0130400 Rhododendron simsii HOM05D001361 ORTHO05D002529 2.7e-09 65.5 87 47.1
arahy.Tifrunner.gnm1.ann1.MZWE21 Arachis hypogaea HOM05D001361 ORTHO05D002529 3.6e-09 65.1 84 45.2
MD05G1007200 Malus domestica HOM05D001361 ORTHO05D002529 3.6e-09 65.1 92 47.8
Atru.chr6.1371 Acer truncatum HOM05D001361 ORTHO05D002529 4.7e-09 64.7 87 48.3
CSS0018559 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 4.7e-09 64.7 78 50.0
Nitab4.5_0000834g0010 Nicotiana tabacum HOM05D001361 ORTHO05D002529 4.7e-09 64.7 92 42.4
CANSAT64G0710 Cannabis sativa HOM05D001361 ORTHO05D002529 8.0e-09 63.9 95 44.2
DCAR_028266 Daucus carota HOM05D001361 ORTHO05D002529 8.0e-09 63.9 89 44.9
Nitab4.5_0002778g0040 Nicotiana tabacum HOM05D001361 ORTHO05D002529 8.0e-09 63.9 92 43.5
A06p43520 Brassica napus HOM05D001361 ORTHO05D002529 1.0e-08 63.5 85 44.7
HanXRQChr17g0538121 Helianthus annuus HOM05D001361 ORTHO05D002529 1.0e-08 63.5 94 43.6
TAR371G0316 Trochodendron aralioides HOM05D001361 ORTHO05D002529 1.0e-08 63.5 93 45.2
MSTRG.12169 Avicennia marina HOM05D001361 ORTHO05D002529 1.4e-08 63.2 87 43.7
MSTRG.24843 Avicennia marina HOM05D001361 ORTHO05D002529 1.4e-08 63.2 87 42.5
PSO591G0091 Papaver somniferum HOM05D001361 ORTHO05D002529 1.4e-08 63.2 89 40.4
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 1.8e-08 62.8 97 41.2
Lsat_1_v5_gn_3_19241 Lactuca sativa HOM05D001361 ORTHO05D002529 1.8e-08 62.8 94 41.5
Nitab4.5_0000556g0200 Nicotiana tabacum HOM05D001361 ORTHO05D002529 1.8e-08 62.8 92 42.4
Peaxi162Scf00456g00212 Petunia axillaris HOM05D001361 ORTHO05D002529 1.8e-08 62.8 49 67.3
CAN.G137.6 Capsicum annuum HOM05D001361 ORTHO05D002529 2.3e-08 62.4 92 42.4
Solyc08g005230.3 Solanum lycopersicum HOM05D001361 ORTHO05D002529 2.3e-08 62.4 92 42.4
unitig_52.g17200 Utricularia gibba HOM05D001361 ORTHO05D002529 2.3e-08 62.4 88 40.9
MD16G1077900 Malus domestica HOM05D001361 ORTHO05D002529 3.0e-08 62.0 92 46.7
Prupe.1G268900 Prunus persica HOM05D001361 ORTHO05D002529 4.0e-08 61.6 90 45.6
PGSC0003DMG400015124 Solanum tuberosum HOM05D001361 ORTHO05D002529 4.0e-08 61.6 92 41.3
MBI04_g10405_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D002529 5.2e-08 61.2 95 44.2
PSO832G1946 Papaver somniferum HOM05D001361 ORTHO05D002529 5.2e-08 61.2 89 39.3
THA.LOC104822929 Tarenaya hassleriana HOM05D001361 ORTHO05D002529 5.2e-08 61.2 74 50.0
Migut.E00752 Erythranthe guttata HOM05D001361 ORTHO05D002529 6.7e-08 60.8 89 42.7
Sopen08g001260 Solanum pennellii HOM05D001361 ORTHO05D002529 6.7e-08 60.8 92 41.3
CDE02G3302 Ceratophyllum demersum HOM05D001361 ORTHO05D002529 1.5e-07 59.7 87 39.1
AUR62028828 Chenopodium quinoa HOM05D001361 ORTHO05D002529 1.5e-07 59.7 92 40.2
CSS0039250 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 2.6e-07 58.9 82 43.9
CSS0040349 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 2.6e-07 58.9 82 43.9
Aqoxy3G03283 Aquilegia oxysepala HOM05D001361 ORTHO05D002529 4.4e-07 58.2 89 37.1
CAN.G726.10 Capsicum annuum HOM05D001361 ORTHO05D002529 4.4e-07 58.2 88 40.9
Hund25266 Selenicereus undatus HOM05D001361 ORTHO05D002529 9.7e-07 57.0 41 63.4
THA.LOC104822101 Tarenaya hassleriana HOM05D001361 ORTHO05D002529 1.7e-06 56.2 71 46.5
AUR62005733 Chenopodium quinoa HOM05D001361 ORTHO05D002529 2.2e-06 55.8 41 63.4
TAR629G0132 Trochodendron aralioides HOM05D001361 ORTHO05D002529 2.8e-06 55.5 95 41.1
HanXRQChr13g0396491 Helianthus annuus HOM05D001361 ORTHO05D002529 6.3e-06 54.3 77 42.9
Lsat_1_v5_gn_6_3540 Lactuca sativa HOM05D001361 ORTHO05D002529 8.2e-06 53.9 92 40.2


User provided reference genes

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