Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G027500 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.3e-51 205.3 104 100.0
Gohir.D04G024950 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.7e-51 203.4 104 99.0
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.1e-41 170.2 101 88.1
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 9.9e-39 163.3 105 83.8
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.4e-38 160.2 105 83.8
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 5.6e-34 147.5 101 77.2
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.8e-32 142.5 101 76.2
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 5.3e-32 141.0 102 78.4
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 6.9e-32 140.6 102 75.5
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 9.0e-32 140.2 101 75.2
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 4.5e-31 137.9 102 76.5
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 7.6e-31 137.1 102 76.5
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 2.5e-29 132.1 100 71.0
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 1.6e-28 129.4 101 70.3
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 6.0e-28 127.5 101 70.3
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 6.0e-28 127.5 104 67.3
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 1.9e-26 122.5 107 68.2
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 2.5e-26 122.1 105 68.6
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.5e-26 122.1 103 68.0
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 9.6e-26 120.2 103 66.0
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 9.6e-26 120.2 102 66.7
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 1.3e-25 119.8 105 67.6
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 2.1e-25 119.0 105 65.7
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 3.7e-25 118.2 105 68.6
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 4.8e-25 117.9 105 68.6
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 4.8e-25 117.9 106 65.1
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.4e-24 116.3 105 67.6
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.4e-24 116.3 83 73.5
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 4.1e-24 114.8 101 65.3
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 5.3e-24 114.4 100 64.0
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 6.9e-24 114.0 101 65.3
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 9.0e-24 113.6 105 66.7
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 1.2e-23 113.2 94 64.9
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 2.6e-23 112.1 103 65.0
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.4e-23 111.7 104 68.3
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 3.4e-23 111.7 99 66.7
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 7.6e-23 110.5 108 58.3
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 1.7e-22 109.4 100 60.0
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 2.9e-22 108.6 102 65.7
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 2.9e-22 108.6 103 64.1
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 3.8e-22 108.2 106 60.4
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 6.5e-22 107.5 103 60.2
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 8.4e-22 107.1 111 62.2
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.1e-21 106.7 103 60.2
Gohir.A05G392150 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.4e-21 106.3 57 93.0
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 2.5e-21 105.5 102 59.8
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 4.2e-21 104.8 100 61.0
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 4.2e-21 104.8 105 64.8
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 5.5e-21 104.4 104 64.4
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 5.5e-21 104.4 103 63.1
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 9.3e-21 103.6 104 64.4
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 6.1e-20 100.9 95 64.2
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 6.1e-20 100.9 123 52.0
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 6.1e-20 100.9 100 58.0
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 6.1e-20 100.9 100 58.0
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 7.9e-20 100.5 95 64.2
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 1.0e-19 100.1 103 62.1
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.3e-19 99.8 104 62.5
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 1.3e-19 99.8 103 58.3
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 1.3e-19 99.8 102 58.8
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 5.1e-19 97.8 102 60.8
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 6.7e-19 97.4 108 56.5
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 1.1e-18 96.7 103 54.4
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 1.5e-18 96.3 98 56.1
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 2.5e-18 95.5 100 59.0
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 5.7e-18 94.4 103 53.4
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 7.4e-18 94.0 108 52.8
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 7.4e-18 94.0 108 55.6
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 7.4e-18 94.0 98 60.2
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 7.4e-18 94.0 95 56.8
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 2.2e-17 92.4 113 54.9
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 2.2e-17 92.4 98 55.1
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 4.8e-17 91.3 102 55.9
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 4.8e-17 91.3 103 56.3
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 8.2e-17 90.5 103 61.2
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 8.2e-17 90.5 103 55.3
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 8.2e-17 90.5 90 60.0
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 8.2e-17 90.5 102 63.7
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.1e-16 90.1 105 55.2
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.1e-16 90.1 105 55.2
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 1.4e-16 89.7 104 55.8
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 3.1e-16 88.6 100 56.0
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 4.1e-16 88.2 106 57.5
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 4.1e-16 88.2 100 58.0
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 4.1e-16 88.2 100 58.0
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 5.3e-16 87.8 62 75.8
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 6.9e-16 87.4 87 59.8
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 9.0e-16 87.0 97 53.6
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 1.2e-15 86.7 91 58.2
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.5e-15 86.3 111 54.1
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 1.5e-15 86.3 88 59.1
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 2.0e-15 85.9 112 50.0
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 2.6e-15 85.5 114 51.8
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.6e-15 85.5 102 55.9
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 2.6e-15 85.5 99 53.5
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 3.4e-15 85.1 104 51.9
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 4.5e-15 84.7 79 63.3
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 7.7e-15 84.0 103 49.5
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 1.7e-14 82.8 79 60.8
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 2.2e-14 82.4 80 58.8
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 2.2e-14 82.4 99 50.5
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 3.8e-14 81.6 89 58.4
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 6.5e-14 80.9 102 50.0
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 1.1e-13 80.1 107 52.3
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 1.1e-13 80.1 110 48.2
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 1.9e-13 79.3 90 53.3
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 5.5e-13 77.8 100 49.0
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 7.2e-13 77.4 101 54.5
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 9.4e-13 77.0 105 51.4
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 3.6e-12 75.1 96 55.2
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 3.6e-12 75.1 76 57.9
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 4.6e-12 74.7 99 52.5
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 1.4e-11 73.2 110 47.3
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 1.4e-11 73.2 92 54.3
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 3.0e-11 72.0 108 44.4
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 3.9e-11 71.6 80 56.2
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 6.7e-11 70.9 120 41.7
TAR633G1445 Trochodendron aralioides HOM05D003827 ORTHO05D004518 8.8e-11 70.5 73 54.8
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 1.1e-10 70.1 98 49.0
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 1.5e-10 69.7 101 49.5
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 2.5e-10 68.9 107 47.7
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 5.7e-10 67.8 108 42.6
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 1.7e-09 66.2 59 62.7
Hma1.2p1_0210F.1_g089550 Hydrangea macrophylla HOM05D003827 ORTHO05D004518 2.8e-09 65.5 54 66.7
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 2.8e-09 65.5 101 44.6
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 3.7e-09 65.1 53 66.0
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 6.3e-09 64.3 100 45.0
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 6.3e-09 64.3 108 39.8
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 1.1e-08 63.5 98 44.9
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 1.8e-08 62.8 69 56.5
CSS0048058 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.8e-08 62.8 47 76.6
CSS0018040 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.4e-08 62.4 57 68.4
CSS0029515 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.4e-08 62.4 57 68.4
CSS0045357 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.4e-08 62.4 57 68.4
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 2.4e-08 62.4 116 40.5
CSS0007174 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.5e-07 59.7 47 74.5
CSS0009045 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.5e-07 59.7 47 74.5
CSS0021062 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D033864 1.5e-07 59.7 47 72.3
CSS0035692 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.5e-07 59.7 47 74.5
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 4.5e-07 58.2 64 54.7
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 5.9e-07 57.8 97 43.3
CSS0002956 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 5.9e-07 57.8 47 72.3
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 1.0e-06 57.0 48 62.5
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 1.0e-06 57.0 99 42.4
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 1.3e-06 56.6 86 46.5
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 1.7e-06 56.2 116 35.3
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 2.2e-06 55.8 99 43.4
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 2.9e-06 55.5 101 41.6
Carub.0005s3005 Capsella rubella HOM05D003827 ORTHO05D004518 5.0e-06 54.7 54 59.3


User provided reference genes

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