Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G022900 Gossypium raimondii HOM05D014341 ORTHO05D011752 1.9e-98 362.8 231 100.0
Gohir.D04G019100 Gossypium hirsutum HOM05D014341 ORTHO05D011752 1.7e-78 296.6 229 88.2
Gohir.A05G395900 Gossypium hirsutum HOM05D014341 ORTHO05D011752 2.8e-78 295.8 264 76.5
Duzib114G0679 Durio zibethinus HOM05D014341 ORTHO05D011752 5.4e-29 132.1 305 35.7
Thecc.10G122500 Theobroma cacao HOM05D014341 ORTHO05D011752 3.0e-27 126.3 108 59.3
Gohir.A05G285600 Gossypium hirsutum HOM05D014341 ORTHO05D011752 3.7e-25 119.4 230 33.5
Gohir.D05G286700 Gossypium hirsutum HOM05D014341 ORTHO05D011752 8.1e-25 118.2 230 38.7
Gorai.009G301700 Gossypium raimondii HOM05D014341 ORTHO05D011752 8.1e-25 118.2 230 38.7
COL.COLO4_16330 Corchorus olitorius HOM05D014341 ORTHO05D011752 3.8e-22 109.4 204 38.7
Ciclev10018348m.g Citrus clementina HOM05D000881 ORTHO05D000666 5.5e-13 79.0 138 33.3
SalBow6G4118 Salvia bowleyana HOM05D000881 ORTHO05D000666 3.5e-12 76.3 90 38.9
Sabra08G0008700 Salix brachista HOM05D010059 ORTHO05D011752 5.1e-11 72.4 149 32.9
AL3G22150 Arabidopsis lyrata HOM05D010059 ORTHO05D011752 1.9e-10 70.5 118 27.1
EL10Ac4g08752 Beta vulgaris HOM05D000881 ORTHO05D000666 3.3e-10 69.7 85 38.8
Migut.D00720 Erythranthe guttata HOM05D000881 ORTHO05D000666 4.3e-10 69.3 91 35.2
Phvul.005G011300 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 4.3e-10 69.3 86 37.2
arahy.Tifrunner.gnm1.ann1.9D7AF0 Arachis hypogaea HOM05D000881 ORTHO05D000666 7.4e-10 68.6 89 39.3
Cpa.g.sc54.45 Carica papaya HOM05D000881 ORTHO05D000666 7.4e-10 68.6 101 34.7
Glyma.06G316200 Glycine max HOM05D000881 ORTHO05D000666 7.4e-10 68.6 92 37.0
MD02G1259500 Malus domestica HOM05D000881 ORTHO05D000666 9.7e-10 68.2 94 36.2
Potri.004G191000 Populus trichocarpa HOM05D000881 ORTHO05D000666 9.7e-10 68.2 83 38.6
Potri.008G014000 Populus trichocarpa HOM05D027296 ORTHO05D037401 9.7e-10 68.2 138 31.9
Glyma.04G130100 Glycine max HOM05D000881 ORTHO05D000666 1.3e-09 67.8 86 37.2
Duzib132G0066 Durio zibethinus HOM05D000881 ORTHO05D000666 2.2e-09 67.0 85 36.5
Medtr5g087450 Medicago truncatula HOM05D000881 ORTHO05D000666 2.8e-09 66.6 91 36.3
QL04p049792 Quercus lobata HOM05D000881 ORTHO05D000666 2.8e-09 66.6 108 32.4
Manes.10G070600 Manihot esculenta HOM05D000881 ORTHO05D000666 4.8e-09 65.9 136 31.6
TWI31G1146 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 4.8e-09 65.9 85 37.6
MSTRG.21312 Avicennia marina HOM05D000881 ORTHO05D000666 6.3e-09 65.5 92 35.9
Atru.chr12.1161 Acer truncatum HOM05D000881 ORTHO05D000666 8.2e-09 65.1 93 33.3
Actinidia17465 Actinidia chinensis HOM05D038880 ORTHO05D000666 8.2e-09 65.1 108 32.4
Actinidia24915 Actinidia chinensis HOM05D000881 ORTHO05D000666 8.2e-09 65.1 130 34.6
CARHR085260 Cardamine hirsuta HOM05D010059 ORTHO05D011752 8.2e-09 65.1 152 23.7
Cfa010462 Carpinus fangiana HOM05D045047 ORTHO05D000666 8.2e-09 65.1 113 32.7
AUR62020187 Chenopodium quinoa HOM05D000881 ORTHO05D000666 8.2e-09 65.1 104 35.6
AT3G10680 Arabidopsis thaliana HOM05D010059 ORTHO05D011752 1.1e-08 64.7 154 24.0
BcaB04g21185 Brassica carinata HOM05D010059 ORTHO05D011752 1.1e-08 64.7 140 25.7
A03p01910 Brassica napus HOM05D000881 ORTHO05D000666 1.1e-08 64.7 83 34.9
BraA03t09561Z Brassica rapa HOM05D000881 ORTHO05D000666 1.1e-08 64.7 83 34.9
Gorai.004G012000 Gossypium raimondii HOM05D000881 ORTHO05D000666 1.1e-08 64.7 105 35.2
Prupe.2G065600 Prunus persica HOM05D000881 ORTHO05D000666 1.1e-08 64.7 109 34.9
Migut.N01922 Erythranthe guttata HOM05D000881 ORTHO05D000666 1.4e-08 64.3 85 35.3
AUR62014290 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.8e-08 63.9 139 31.7
Peaxi162Scf00647g00136 Petunia axillaris HOM05D000881 ORTHO05D000666 1.8e-08 63.9 111 34.2
Hund18820 Selenicereus undatus HOM05D000881 ORTHO05D000666 1.8e-08 63.9 88 35.2
unitig_0.g2304 Utricularia gibba HOM05D000881 ORTHO05D000080 1.8e-08 63.9 86 37.2
FvH4_7g05240 Fragaria vesca HOM05D000881 ORTHO05D000666 2.4e-08 63.5 85 36.5
FAN03G3143 Fragaria x ananassa HOM05D000881 ORTHO05D000666 2.4e-08 63.5 85 36.5
SalBow4G2822 Salvia bowleyana HOM05D000881 ORTHO05D000666 2.4e-08 63.5 85 34.1
Sed0020157 Sechium edule HOM05D000881 ORTHO05D000666 2.4e-08 63.5 95 34.7
Sopen01g040680 Solanum pennellii HOM05D000881 ORTHO05D000666 2.4e-08 63.5 96 34.4
PGSC0003DMG400027498 Solanum tuberosum HOM05D000881 ORTHO05D000666 2.4e-08 63.5 95 36.8
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 3.1e-08 63.2 136 30.1
BcaB01g05921 Brassica carinata HOM05D000881 ORTHO05D000666 3.1e-08 63.2 83 33.7
C03p02280 Brassica napus HOM05D000881 ORTHO05D000666 3.1e-08 63.2 83 33.7
QL04p049805 Quercus lobata HOM05D000881 ORTHO05D000666 3.1e-08 63.2 108 30.6
BcaC05g29438 Brassica carinata HOM05D010059 ORTHO05D011752 4.1e-08 62.8 144 25.7
TWI63G0669 Tripterygium wilfordii HOM05D010059 ORTHO05D000666 4.1e-08 62.8 97 32.0
VMungo0647G1281 Vigna mungo HOM05D000881 ORTHO05D000666 4.1e-08 62.8 115 30.4
Ah.08g222530 Amaranthus hybridus HOM05D000881 ORTHO05D000666 5.3e-08 62.4 88 35.2
BraA01t04230Z Brassica rapa HOM05D010059 ORTHO05D011752 5.3e-08 62.4 133 24.8
Glyma.14G045300 Glycine max HOM05D000881 ORTHO05D000666 6.9e-08 62.0 143 31.5
Lj3g0025354 Lotus japonicus HOM05D000881 ORTHO05D000666 6.9e-08 62.0 91 35.2
Lj3g0025880 Lotus japonicus HOM05D000881 ORTHO05D000666 6.9e-08 62.0 96 32.3
Solyc01g096980.2 Solanum lycopersicum HOM05D000881 ORTHO05D000666 6.9e-08 62.0 96 33.3
AUR62034145 Chenopodium quinoa HOM05D000881 ORTHO05D000666 9.0e-08 61.6 137 31.4
Lsat_1_v5_gn_1_87140 Lactuca sativa HOM05D000881 ORTHO05D000666 9.0e-08 61.6 140 27.9
Potri.008G013800 Populus trichocarpa HOM05D000881 ORTHO05D000666 9.0e-08 61.6 143 30.8
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 1.2e-07 61.2 85 31.8
Thhalv10020532m.g Eutrema salsugineum HOM05D010059 ORTHO05D011752 1.2e-07 61.2 144 25.0
HanXRQChr17g0559031 Helianthus annuus HOM05D000881 ORTHO05D000666 1.2e-07 61.2 85 32.9
Medtr8g046245 Medicago truncatula HOM05D000881 ORTHO05D000666 1.2e-07 61.2 139 30.2
CSS0037632 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 1.5e-07 60.8 108 37.0
Carub.0003s0991 Capsella rubella HOM05D010059 ORTHO05D011752 1.5e-07 60.8 145 23.4
Cc00_g20150 Coffea canephora HOM05D000881 ORTHO05D000666 1.5e-07 60.8 129 31.0
HanXRQChr16g0516881 Helianthus annuus HOM05D000881 ORTHO05D000666 1.5e-07 60.8 120 28.3
Phvul.008G209800 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 1.5e-07 60.8 143 28.7
Sabra08G0008400 Salix brachista HOM05D000881 ORTHO05D000666 1.5e-07 60.8 168 29.8
Hund06059 Selenicereus undatus HOM05D000881 ORTHO05D000666 1.5e-07 60.8 139 30.9
Sc06g0002830 Simmondsia chinensis HOM05D000881 ORTHO05D000666 1.5e-07 60.8 88 34.1
BolC1t05368H Brassica oleracea HOM05D010059 ORTHO05D011752 2.0e-07 60.5 153 22.9
BolC2t06177H Brassica oleracea HOM05D010059 ORTHO05D000666 2.0e-07 60.5 85 34.1
Glyma.15G216700 Glycine max HOM05D000881 ORTHO05D000666 2.0e-07 60.5 109 33.0
BcaC03g13137 Brassica carinata HOM05D000881 ORTHO05D000666 2.6e-07 60.1 85 34.1
C02p02100 Brassica napus HOM05D000881 ORTHO05D000666 2.6e-07 60.1 85 34.1
Lalb_Chr19g0132461 Lupinus albus HOM05D000881 ORTHO05D000666 2.6e-07 60.1 128 32.8
MBI11_g07704_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 2.6e-07 60.1 89 31.5
TPR.G8594 Trifolium pratense HOM05D000881 ORTHO05D000666 2.6e-07 60.1 121 32.2
arahy.Tifrunner.gnm1.ann1.ZVX95B Arachis hypogaea HOM05D000881 ORTHO05D000666 3.4e-07 59.7 106 34.0
MELO3C012317.2 Cucumis melo HOM05D018703 ORTHO05D000666 3.4e-07 59.7 85 37.6
HanXRQChr11g0326381 Helianthus annuus HOM05D000881 ORTHO05D000666 3.4e-07 59.7 98 30.6
TPR.G11722 Trifolium pratense HOM05D000881 ORTHO05D000666 3.4e-07 59.7 91 34.1
arahy.Tifrunner.gnm1.ann1.PZF4SB Arachis hypogaea HOM05D000881 ORTHO05D000666 4.5e-07 59.3 106 34.0
CARHR208380 Cardamine hirsuta HOM05D000881 ORTHO05D000080 4.5e-07 59.3 83 33.7
Dinv05245 Davidia involucrata HOM05D000881 ORTHO05D000666 4.5e-07 59.3 131 30.5
HanXRQChr15g0470771 Helianthus annuus HOM05D000881 ORTHO05D000666 4.5e-07 59.3 92 31.5
MD07G1061000 Malus domestica HOM05D000881 ORTHO05D000666 4.5e-07 59.3 85 34.1
Potri.010G245500 Populus trichocarpa HOM05D000881 ORTHO05D000666 4.5e-07 59.3 151 29.1
SGA_v2.0_scaffold29G12123 Striga asiatica HOM05D000881 ORTHO05D000666 4.5e-07 59.3 142 30.3
BraA02t04826Z Brassica rapa HOM05D000881 ORTHO05D000666 5.9e-07 58.9 85 34.1
FAN06G2536 Fragaria x ananassa HOM05D000881 ORTHO05D000666 5.9e-07 58.9 116 29.3
Potri.004G191101 Populus trichocarpa HOM05D000881 ORTHO05D000666 5.9e-07 58.9 132 33.3
Sc21g0006620 Simmondsia chinensis HOM05D000881 ORTHO05D000666 5.9e-07 58.9 107 29.9
arahy.Tifrunner.gnm1.ann1.GLLM5N Arachis hypogaea HOM05D000881 ORTHO05D000666 7.7e-07 58.5 148 29.7
AUR62001593 Chenopodium quinoa HOM05D000881 ORTHO05D000666 7.7e-07 58.5 125 30.4
Ciclev10016030m.g Citrus clementina HOM05D000881 ORTHO05D000666 7.7e-07 58.5 130 30.0
Potri.004G191200 Populus trichocarpa HOM05D000881 ORTHO05D000666 7.7e-07 58.5 132 33.3
SGA_v2.0_scaffold196G40977 Striga asiatica HOM05D000881 ORTHO05D000666 7.7e-07 58.5 130 30.0
TPR.G11784 Trifolium pratense HOM05D000881 ORTHO05D000666 7.7e-07 58.5 94 34.0
CiPaw.13G128700 Carya illinoinensis HOM05D000881 ORTHO05D000666 1.0e-06 58.2 130 30.0
AUR62020188 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.0e-06 58.2 88 30.7
MELO3C012318.2 Cucumis melo HOM05D018703 ORTHO05D022370 1.0e-06 58.2 98 32.7
Lsat_1_v5_gn_7_14200 Lactuca sativa HOM05D000881 ORTHO05D000666 1.0e-06 58.2 92 30.4
Medtr3g007660 Medicago truncatula HOM05D000881 ORTHO05D000666 1.0e-06 58.2 87 32.2
Oeu038472.1 Olea europaea HOM05D000881 ORTHO05D000666 1.0e-06 58.2 93 31.2
RcHm_v2.0_Chr1g0331581 Rosa chinensis HOM05D000881 ORTHO05D000666 1.0e-06 58.2 125 30.4
SalBow6G6574 Salvia bowleyana HOM05D000125 ORTHO05D000120 1.0e-06 58.2 87 32.2
Sed0019713 Sechium edule HOM05D000881 ORTHO05D000666 1.0e-06 58.2 84 33.3
THA.LOC104816481 Tarenaya hassleriana HOM05D010059 ORTHO05D011752 1.0e-06 58.2 135 25.9
AUR62001592 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.3e-06 57.8 125 28.8
HanXRQChr04g0102121 Helianthus annuus HOM05D000881 ORTHO05D000666 1.3e-06 57.8 84 33.3
Sp3g09000 Schrenkiella parvula HOM05D010059 ORTHO05D011752 1.3e-06 57.8 154 24.0
C05p57400 Brassica napus HOM05D010059 ORTHO05D011752 1.7e-06 57.4 150 25.3
BolC5t34396H Brassica oleracea HOM05D010059 ORTHO05D011752 1.7e-06 57.4 150 25.3
Gohir.D08G017600 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.7e-06 57.4 133 30.1
MBI11_g07703_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 1.7e-06 57.4 106 29.2
Hund20971 Selenicereus undatus HOM05D000881 ORTHO05D000666 2.2e-06 57.0 88 31.8
Solyc01g096960.3 Solanum lycopersicum HOM05D000881 ORTHO05D000666 2.2e-06 57.0 154 31.8
A05p38500 Brassica napus HOM05D010059 ORTHO05D011752 2.9e-06 56.6 145 24.8
BraA05t22641Z Brassica rapa HOM05D010059 ORTHO05D011752 2.9e-06 56.6 145 24.8
Manes.07G083200 Manihot esculenta HOM05D000881 ORTHO05D000666 2.9e-06 56.6 126 26.2
Oeu027039.1 Olea europaea HOM05D000881 ORTHO05D000666 2.9e-06 56.6 85 31.8
Potri.009G153000 Populus trichocarpa HOM05D000881 ORTHO05D000666 2.9e-06 56.6 119 28.6
Phvul.011G184300 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 3.8e-06 56.2 108 32.4
TWI81G0343 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 3.8e-06 56.2 123 27.6
EL10Ac7g16246 Beta vulgaris HOM05D000881 ORTHO05D000666 5.0e-06 55.8 104 29.8
A10p31260 Brassica napus HOM05D000881 ORTHO05D000666 5.0e-06 55.8 137 29.9
DCAR_011554 Daucus carota HOM05D000881 ORTHO05D000666 5.0e-06 55.8 114 27.2
Sopen01g040670 Solanum pennellii HOM05D000881 ORTHO05D000666 5.0e-06 55.8 153 32.0
Thecc.03G079800 Theobroma cacao HOM05D000881 ORTHO05D000666 5.0e-06 55.8 105 27.6
TPR.G25508 Trifolium pratense HOM05D011778 ORTHO05D012624 5.0e-06 55.8 85 29.4
Atru.chr3.3015 Acer truncatum HOM05D000881 ORTHO05D000666 6.5e-06 55.5 129 28.7
ATR0697G043 Amborella trichopoda HOM05D000881 ORTHO05D000666 6.5e-06 55.5 114 27.2
C09p71880 Brassica napus HOM05D000881 ORTHO05D000666 6.5e-06 55.5 134 29.1
BraA10t45169Z Brassica rapa HOM05D000881 ORTHO05D000666 6.5e-06 55.5 133 30.1
Duzib168G0272 Durio zibethinus HOM05D000881 ORTHO05D000666 6.5e-06 55.5 104 31.7
MD07G1061100 Malus domestica HOM05D000881 ORTHO05D000666 6.5e-06 55.5 101 29.7
Psat4g142360 Pisum sativum HOM05D000881 ORTHO05D000666 6.5e-06 55.5 115 29.6
DCAR_006194 Daucus carota HOM05D000881 ORTHO05D000666 8.5e-06 55.1 93 35.5
Thhalv10002090m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 8.5e-06 55.1 101 32.7
Psat2g023400 Pisum sativum HOM05D000881 ORTHO05D000666 8.5e-06 55.1 147 27.9


User provided reference genes

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