Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 7.3e-139 497.3 260 100.0
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.0e-132 476.9 260 96.5
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.5e-117 425.2 259 88.8
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 5.3e-65 251.9 199 66.8
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 9.7e-59 231.1 193 64.2
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.4e-52 210.7 196 64.8
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.4e-51 204.9 189 61.9
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.1e-49 201.1 189 60.8
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.5e-48 195.7 189 59.8
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-31 141.0 201 45.8
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.3e-31 140.2 201 45.8
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.5e-31 138.7 200 45.0
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.6e-29 134.0 156 46.8
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 3.6e-29 132.9 117 57.3
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 4.7e-29 132.5 127 54.3
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 6.1e-29 132.1 122 58.2
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.8e-28 130.6 116 56.0
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 8.9e-28 128.3 115 58.3
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.0e-27 127.1 134 51.5
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 2.0e-27 127.1 130 52.3
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 2.6e-27 126.7 107 55.1
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 2.6e-27 126.7 194 40.7
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.4e-27 126.3 138 51.4
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 3.4e-27 126.3 196 43.4
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 5.7e-27 125.6 143 50.3
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 5.7e-27 125.6 135 48.9
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 7.5e-27 125.2 210 40.0
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 7.5e-27 125.2 138 51.4
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 7.5e-27 125.2 138 51.4
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.7e-26 124.0 121 52.9
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.7e-26 124.0 119 51.3
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.8e-26 123.2 116 53.4
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.8e-26 123.2 116 53.4
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 2.8e-26 123.2 167 44.3
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 2.8e-26 123.2 153 43.1
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 3.7e-26 122.9 148 48.0
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 3.7e-26 122.9 117 54.7
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 6.3e-26 122.1 135 48.1
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 6.3e-26 122.1 123 47.2
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 1.4e-25 120.9 204 37.7
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.4e-25 120.9 121 50.4
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.4e-25 120.9 119 51.3
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 7.0e-25 118.6 116 48.3
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 7.0e-25 118.6 125 48.8
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.2e-24 117.9 118 52.5
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.6e-24 117.5 171 43.3
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.6e-24 117.5 116 55.2
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.0e-24 117.1 124 48.4
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 2.0e-24 117.1 124 48.4
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 2.0e-24 117.1 124 48.4
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 2.0e-24 117.1 109 51.4
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 2.7e-24 116.7 122 45.1
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 2.7e-24 116.7 116 50.9
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 5.9e-24 115.5 124 47.6
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 5.9e-24 115.5 124 47.6
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.0e-23 114.8 127 44.1
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.3e-23 113.6 123 49.6
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 2.3e-23 113.6 121 44.6
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.9e-23 113.2 114 49.1
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 2.9e-23 113.2 128 48.4
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 2.9e-23 113.2 123 45.5
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 3.8e-23 112.8 138 47.1
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 5.0e-23 112.5 125 48.0
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 5.0e-23 112.5 114 50.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 6.6e-23 112.1 128 42.2
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.1e-22 111.3 121 50.4
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.3e-22 109.8 122 46.7
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 3.3e-22 109.8 123 48.0
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.3e-22 109.4 131 48.1
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 5.6e-22 109.0 125 46.4
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 5.6e-22 109.0 131 47.3
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 7.3e-22 108.6 123 47.2
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 9.5e-22 108.2 114 50.9
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 9.5e-22 108.2 114 50.9
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.2e-21 107.8 131 46.6
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.2e-21 107.8 114 49.1
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.2e-21 107.8 125 46.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.6e-21 107.5 186 35.5
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 2.1e-21 107.1 125 46.4
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 2.8e-21 106.7 114 48.2
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.6e-21 106.3 114 49.1
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.7e-21 105.9 138 37.0
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.7e-21 105.9 129 45.7
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 6.1e-21 105.5 132 45.5
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 6.1e-21 105.5 126 46.8
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 6.1e-21 105.5 132 45.5
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 6.1e-21 105.5 126 46.8
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 8.0e-21 105.1 128 45.3
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 8.0e-21 105.1 130 46.9
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 8.0e-21 105.1 110 50.0
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.0e-20 104.8 144 44.4
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.0e-20 104.8 128 46.1
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.4e-20 104.4 133 46.6
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.4e-20 104.4 115 47.0
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.4e-20 104.4 143 42.0
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 1.8e-20 104.0 132 44.7
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.8e-20 104.0 110 49.1
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.8e-20 104.0 184 36.4
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 3.0e-20 103.2 122 45.9
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.2e-20 102.4 117 45.3
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 6.8e-20 102.1 168 39.9
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 8.9e-20 101.7 115 45.2
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.2e-19 101.3 118 46.6
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.5e-19 100.9 138 42.8
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.5e-19 100.9 138 42.8
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.0e-19 100.5 140 42.9
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.0e-19 100.5 140 42.9
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 2.0e-19 100.5 139 44.6
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 2.0e-19 100.5 134 36.6
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.6e-19 100.1 114 47.4
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 2.6e-19 100.1 109 45.9
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 3.4e-19 99.8 138 42.0
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 4.4e-19 99.4 141 41.8
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 9.8e-19 98.2 138 39.9
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 9.8e-19 98.2 185 36.8
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 6.4e-18 95.5 147 36.7
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.1e-17 94.7 122 36.9
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 7.0e-17 92.0 144 38.9
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 7.0e-17 92.0 112 42.0
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 7.0e-17 92.0 174 34.5
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.0e-16 90.5 167 35.9
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.5e-16 89.7 127 37.8
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 3.5e-16 89.7 167 35.9
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.6e-16 89.4 153 31.4
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.6e-16 89.4 153 31.4
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 6.0e-16 89.0 135 37.0
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 1.0e-15 88.2 118 39.8
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 2.3e-15 87.0 132 37.9
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 5.0e-15 85.9 167 34.7
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 5.0e-15 85.9 135 36.3
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 6.6e-15 85.5 123 39.8
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.1e-14 84.7 140 35.0
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.5e-14 84.3 147 35.4
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.9e-14 84.0 157 33.1
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.5e-14 83.6 129 38.0
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.5e-14 83.6 129 38.0
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 5.6e-14 82.4 105 42.9
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.8e-13 80.1 152 34.2
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 8.0e-13 78.6 125 36.8
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.1e-12 78.2 138 34.8
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 2.3e-12 77.0 119 37.8
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 4.0e-12 76.3 119 41.2
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 6.8e-12 75.5 156 30.1
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 2.0e-11 73.9 118 41.5
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.6e-11 73.6 154 29.9
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.6e-11 73.6 113 41.6
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 5.8e-11 72.4 96 36.5
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.8e-11 72.4 85 40.0
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 2.9e-10 70.1 90 41.1
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 4.9e-10 69.3 116 38.8
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.9e-09 67.4 158 29.1
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.4e-09 67.0 132 32.6
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 9.2e-09 65.1 71 47.9
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.2e-08 64.7 117 35.0
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 3.5e-08 63.2 92 35.9
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 6.0e-08 62.4 175 27.4
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 6.0e-08 62.4 117 36.8
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.9e-07 59.7 129 30.2
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.0e-07 59.3 140 35.0
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.5e-06 57.8 78 38.5
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 5.6e-06 55.8 132 26.5
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 9.5e-06 55.1 132 28.8


User provided reference genes

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