Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 9.9e-220 766.5 403 100.0
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 9.9e-220 766.5 403 100.0
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.1e-218 760.4 403 98.5
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.4e-197 693.0 403 90.3
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 4.5e-196 688.0 398 90.2
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 7.9e-193 677.2 418 84.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.8e-182 642.1 406 80.8
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.4e-181 639.0 404 80.7
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 3.1e-181 638.6 403 80.1
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.0e-179 633.6 399 81.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.3e-179 633.3 403 78.4
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 5.0e-179 631.3 403 83.1
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 8.5e-179 630.6 403 83.1
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 9.4e-178 627.1 404 79.5
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 6.1e-177 624.4 404 77.7
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.0e-176 623.6 404 80.4
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.0e-176 622.1 404 78.7
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.2e-175 620.2 406 78.8
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 5.7e-175 617.8 405 80.0
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.7e-175 617.8 404 77.5
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.8e-173 612.8 404 76.7
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.4e-173 612.5 398 78.9
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 3.1e-173 612.1 405 76.8
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 3.1e-173 612.1 405 76.8
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 3.5e-172 608.6 404 76.7
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 5.9e-172 607.8 404 78.5
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 7.7e-172 607.4 404 76.5
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.3e-171 606.7 405 75.8
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.3e-171 606.7 402 78.1
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.9e-171 605.5 406 77.3
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 3.8e-171 605.1 403 75.7
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 5.0e-171 604.7 405 76.8
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 6.5e-171 604.4 403 77.2
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 9.4e-170 600.5 403 74.4
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 9.4e-170 600.5 406 74.9
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.1e-169 599.4 403 80.4
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 2.1e-169 599.4 406 74.6
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 6.1e-169 597.8 409 75.6
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.0e-168 597.0 403 74.7
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.3e-168 595.9 409 75.3
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 5.2e-168 594.7 409 75.3
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 6.8e-168 594.3 407 74.9
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 6.8e-168 594.3 406 74.1
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 8.8e-168 594.0 399 74.4
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.5e-167 593.2 406 75.4
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.5e-167 593.2 406 75.4
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 2.6e-167 592.4 402 75.4
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 9.8e-167 590.5 408 74.3
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 9.8e-167 590.5 404 74.8
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.3e-166 590.1 409 73.3
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.7e-166 588.6 409 72.6
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.8e-166 588.2 409 72.9
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 4.8e-166 588.2 406 74.9
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 6.3e-166 587.8 409 72.4
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 6.3e-166 587.8 399 75.4
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 8.3e-166 587.4 405 73.3
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 3.1e-165 585.5 407 74.7
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 7.0e-165 584.3 398 75.4
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.6e-164 583.2 404 75.5
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 1.6e-164 583.2 404 74.5
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.6e-164 583.2 388 75.8
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.5e-164 582.0 409 71.6
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.5e-164 582.0 400 73.2
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 7.7e-164 580.9 401 75.6
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.7e-163 579.7 401 75.1
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 6.5e-163 577.8 401 75.1
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.1e-162 577.0 403 71.5
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.5e-162 576.6 440 69.8
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.5e-162 575.9 403 73.4
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.5e-162 575.9 402 74.6
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.5e-162 573.9 409 70.9
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.2e-161 573.5 405 72.8
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 2.8e-161 572.4 400 73.0
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 4.7e-161 571.6 400 74.0
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 4.7e-161 571.6 402 73.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 6.1e-161 571.2 398 74.1
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 8.0e-161 570.9 406 72.7
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.3e-160 569.3 411 72.0
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.6e-159 565.8 406 72.4
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 7.5e-159 564.3 406 73.2
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 9.8e-159 563.9 402 73.4
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.3e-158 563.5 450 65.8
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.3e-158 563.5 400 73.8
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.7e-158 563.1 404 71.5
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 3.7e-158 562.0 406 72.2
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 4.9e-158 561.6 404 71.0
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.3e-158 560.8 406 73.2
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 8.3e-158 560.8 406 72.2
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.4e-157 560.1 406 71.9
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.4e-157 559.3 401 72.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 9.2e-157 557.4 406 68.7
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.2e-156 557.0 406 71.4
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.6e-156 556.6 412 71.8
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 5.9e-156 554.7 399 70.4
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.0e-155 553.9 406 71.2
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.3e-155 552.7 403 69.7
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 2.3e-155 552.7 410 70.0
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 2.3e-155 552.7 453 66.0
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 5.0e-155 551.6 402 71.9
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 4.3e-154 548.5 405 67.7
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 7.3e-154 547.7 405 72.3
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 7.3e-154 547.7 443 67.5
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.7e-153 545.0 407 70.0
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 5.2e-152 541.6 406 68.0
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 6.8e-152 541.2 429 66.4
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.2e-151 540.4 403 71.2
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 2.9e-150 535.8 403 70.2
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 3.7e-150 535.4 406 68.2
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 4.9e-150 535.0 401 67.8
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.6e-148 530.0 403 68.5
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 7.8e-148 527.7 401 66.1
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.9e-146 523.1 403 69.2
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.2e-145 520.4 407 68.8
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.0e-144 517.3 403 65.0
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 8.6e-139 497.7 399 64.2
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 2.8e-137 492.7 412 64.3
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 3.6e-137 492.3 374 67.1
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 2.0e-135 486.5 403 60.5
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.8e-129 466.1 519 52.0
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 6.4e-126 454.9 331 71.6
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.4e-125 453.8 318 73.3
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 4.1e-125 452.2 293 77.8
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.0e-119 433.3 438 57.3
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.3e-118 430.6 373 60.9
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 6.0e-116 421.8 442 55.4
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 3.9e-115 419.1 404 59.4
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 3.1e-112 409.5 403 54.3
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.1e-104 384.4 404 51.5
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.1e-104 384.4 404 51.5
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.9e-101 373.6 397 51.6
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 5.3e-96 355.5 400 56.2
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 8.7e-91 338.2 405 47.7
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 2.5e-85 320.1 403 50.6
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.3e-81 307.8 203 77.3
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 6.3e-65 252.3 364 43.1
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 7.7e-63 245.4 432 37.5
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 8.5e-62 241.9 262 55.3
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.7e-57 226.5 309 44.0
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.2e-53 213.4 151 74.8
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.0e-43 181.8 147 70.1
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 7.3e-29 132.5 93 73.1
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.2e-28 131.7 100 67.0
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.3e-25 121.7 128 54.7
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.1e-24 118.6 416 28.6
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.9e-24 117.9 108 59.3
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.1e-24 116.7 105 55.2
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.9e-22 110.2 73 72.6
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.0e-22 109.8 187 43.3
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 5.0e-22 109.8 69 79.7
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 4.7e-20 103.2 165 42.4
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 7.5e-18 95.9 444 26.1
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 8.3e-17 92.4 68 67.6
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 1.6e-15 88.2 451 23.1
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 4.3e-13 80.1 367 25.6
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 3.1e-11 73.9 62 71.0
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.6e-10 70.9 61 60.7
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 1.6e-07 61.6 86 45.3
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.6e-07 61.6 34 82.4
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 2.3e-06 57.8 40 72.5


User provided reference genes

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