Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G162000 Gossypium raimondii HOM05D015435 ORTHO05D000007 7.4e-104 380.6 194 100.0
Gorai.012G033400 Gossypium raimondii HOM05D015435 ORTHO05D000007 1.6e-18 97.1 174 35.6
Gorai.010G155700 Gossypium raimondii HOM05D015435 ORTHO05D000007 2.4e-17 93.2 169 35.5
Gorai.010G075700 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.7e-15 87.0 235 27.2
Gorai.013G140300 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.6e-13 80.5 130 33.1
Gorai.003G070900 Gossypium raimondii HOM05D000003 ORTHO05D000007 2.3e-12 76.6 204 26.0
TWI56G1353 Tripterygium wilfordii HOM05D000003 ORTHO05D000007 6.6e-12 75.1 118 40.7
Gorai.N011700 Gossypium raimondii HOM05D000003 ORTHO05D000007 8.7e-12 74.7 155 37.4
Gorai.003G132500 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.9e-11 73.6 129 37.2
EL10Ac2g03868 Beta vulgaris HOM05D000003 ORTHO05D000007 3.3e-11 72.8 132 30.3
EL10Ac4g10100 Beta vulgaris HOM05D000003 ORTHO05D000007 3.3e-11 72.8 132 30.3
Gorai.005G202500 Gossypium raimondii HOM05D000003 ORTHO05D036330 4.3e-11 72.4 113 38.1
Gorai.007G183500 Gossypium raimondii HOM05D000003 ORTHO05D000007 5.6e-11 72.0 110 38.2
Gorai.007G282400 Gossypium raimondii HOM05D035969 ORTHO05D000007 2.1e-10 70.1 83 41.0
EL10Ac5g10755 Beta vulgaris HOM05D000003 ORTHO05D000007 2.8e-10 69.7 143 30.8
EL10Ac6g13602 Beta vulgaris HOM05D000003 ORTHO05D000007 2.8e-10 69.7 133 31.6
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 2.8e-10 69.7 121 32.2
Atru.chr4.174 Acer truncatum HOM05D000003 ORTHO05D000007 3.6e-10 69.3 66 47.0
EL10Ac3g06843 Beta vulgaris HOM05D000003 ORTHO05D000007 3.6e-10 69.3 116 33.6
Gorai.004G145600 Gossypium raimondii HOM05D000003 ORTHO05D000007 3.6e-10 69.3 63 49.2
Gohir.D07G124050 Gossypium hirsutum HOM05D039549 ORTHO05D020798 6.2e-10 68.6 215 26.0
Gorai.007G227100 Gossypium raimondii HOM05D039879 ORTHO05D036269 8.1e-10 68.2 68 47.1
Gorai.008G030200 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.1e-09 67.8 125 40.8
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.1e-09 67.8 119 31.9
Gorai.002G135300 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.4e-09 67.4 115 35.7
Gorai.006G051600 Gossypium raimondii HOM05D015435 ORTHO05D020798 1.4e-09 67.4 149 30.9
Gorai.010G167300 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.4e-09 67.4 63 50.8
TPR.G11139 Trifolium pratense HOM05D000003 ORTHO05D000007 1.4e-09 67.4 134 29.9
Atru.chr12.2519 Acer truncatum HOM05D000003 ORTHO05D000007 2.4e-09 66.6 67 43.3
Atru.chr2.1276 Acer truncatum HOM05D000003 ORTHO05D000007 2.4e-09 66.6 114 33.3
Ciclev10013460m.g Citrus clementina HOM05D000003 ORTHO05D000007 2.4e-09 66.6 191 26.7
QL10p063003 Quercus lobata HOM05D000003 ORTHO05D000007 4.0e-09 65.9 67 44.8
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.3e-09 65.5 130 35.4
Gorai.004G096300 Gossypium raimondii HOM05D000003 ORTHO05D000007 5.3e-09 65.5 98 39.8
Sabra15G0020800 Salix brachista HOM05D013820 ORTHO05D000007 5.3e-09 65.5 154 29.2
Gorai.009G311100 Gossypium raimondii HOM05D000003 ORTHO05D000007 9.0e-09 64.7 75 42.7
TPR.G22534 Trifolium pratense HOM05D000003 ORTHO05D000007 9.0e-09 64.7 130 33.1
Atru.chr6.753 Acer truncatum HOM05D000003 ORTHO05D000007 1.2e-08 64.3 66 42.4
Atru.chr7.1602 Acer truncatum HOM05D000003 ORTHO05D000007 1.2e-08 64.3 114 32.5
Cpa.g.c33197.1 Carica papaya HOM05D000003 ORTHO05D000007 1.2e-08 64.3 111 35.1
COL.COLO4_12291 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.2e-08 64.3 118 33.1
RcHm_v2.0_Chr2g0146151 Rosa chinensis HOM05D000003 ORTHO05D000006 1.2e-08 64.3 136 30.1
Sabra08G0135000 Salix brachista HOM05D000003 ORTHO05D000007 1.2e-08 64.3 187 25.1
Rhsim09G0202100 Rhododendron simsii HOM05D000003 ORTHO05D000007 1.5e-08 63.9 150 29.3
Atru.chr9.654 Acer truncatum HOM05D000003 ORTHO05D000007 2.0e-08 63.5 145 26.9
COL.COLO4_13796 Corchorus olitorius HOM05D000003 ORTHO05D000007 2.0e-08 63.5 116 30.2
Cpa.g.sc16.67 Carica papaya HOM05D000003 ORTHO05D000007 2.6e-08 63.2 80 40.0
Gorai.010G180600 Gossypium raimondii HOM05D000003 ORTHO05D000007 2.6e-08 63.2 82 39.0
Psat7g109680 Pisum sativum HOM05D003775 ORTHO05D004314 2.6e-08 63.2 107 30.8
QL09p023087 Quercus lobata HOM05D000003 ORTHO05D000007 2.6e-08 63.2 118 34.7
RcHm_v2.0_Chr3g0492931 Rosa chinensis HOM05D000003 ORTHO05D000007 2.6e-08 63.2 155 29.7
Cpa.g.sc203.9 Carica papaya HOM05D009428 ORTHO05D000007 3.4e-08 62.8 117 33.3
Gorai.007G188900 Gossypium raimondii HOM05D000003 ORTHO05D000007 3.4e-08 62.8 188 25.5
Gorai.012G084700 Gossypium raimondii HOM05D000003 ORTHO05D000007 3.4e-08 62.8 116 31.9
Atru.chr10.1301 Acer truncatum HOM05D000003 ORTHO05D000006 4.5e-08 62.4 114 32.5
Atru.chr4.106 Acer truncatum HOM05D000003 ORTHO05D000007 4.5e-08 62.4 118 31.4
Gorai.005G174000 Gossypium raimondii HOM05D023395 ORTHO05D000007 4.5e-08 62.4 173 27.7
Prupe.2G044900 Prunus persica HOM05D000003 ORTHO05D000007 4.5e-08 62.4 69 44.9
QL08p009646 Quercus lobata HOM05D000003 ORTHO05D000007 4.5e-08 62.4 78 38.5
THA.LOC104799464 Tarenaya hassleriana HOM05D000003 ORTHO05D000007 4.5e-08 62.4 111 35.1
FvH4_1g28741 Fragaria vesca HOM05D000003 ORTHO05D000007 5.8e-08 62.0 164 32.3
Prupe.2G055100 Prunus persica HOM05D000003 ORTHO05D000007 5.8e-08 62.0 123 30.1
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-08 61.6 114 32.5
Lj1g0011911 Lotus japonicus HOM05D000003 ORTHO05D000007 7.6e-08 61.6 103 35.0
Lj2g0019281 Lotus japonicus HOM05D000003 ORTHO05D000007 7.6e-08 61.6 139 33.1
Prupe.7G019600 Prunus persica HOM05D000003 ORTHO05D000007 7.6e-08 61.6 93 38.7
Atru.chr7.666 Acer truncatum HOM05D000003 ORTHO05D000007 9.9e-08 61.2 114 31.6
QL08p054104 Quercus lobata HOM05D000003 ORTHO05D000007 9.9e-08 61.2 117 26.5
TPR.G23327 Trifolium pratense HOM05D000737 ORTHO05D000581 1.3e-07 60.8 161 26.7
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-07 60.5 131 28.2
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 1.7e-07 60.5 81 39.5
Gorai.009G408000 Gossypium raimondii HOM05D062482 ORTHO05D036330 1.7e-07 60.5 100 33.0
Sabra15G0018300 Salix brachista HOM05D013820 ORTHO05D000007 1.7e-07 60.5 86 34.9
Gorai.005G048700 Gossypium raimondii HOM05D000003 ORTHO05D000007 2.2e-07 60.1 124 31.5
Gorai.006G167200 Gossypium raimondii HOM05D000003 ORTHO05D000007 2.2e-07 60.1 118 39.0
Lj5g0016382 Lotus japonicus HOM05D000003 ORTHO05D000007 2.2e-07 60.1 141 31.9
TPR.G31733 Trifolium pratense HOM05D000003 ORTHO05D000007 2.2e-07 60.1 85 38.8
TPR.G4588 Trifolium pratense HOM05D061595 ORTHO05D000007 2.2e-07 60.1 83 37.3
Gorai.001G193300 Gossypium raimondii HOM05D039879 ORTHO05D036269 2.9e-07 59.7 108 34.3
Gorai.011G227900 Gossypium raimondii HOM05D000003 ORTHO05D000007 2.9e-07 59.7 113 36.3
QL11p001943 Quercus lobata HOM05D000003 ORTHO05D000007 2.9e-07 59.7 132 31.1
TPR.G319 Trifolium pratense HOM05D000003 ORTHO05D000007 2.9e-07 59.7 87 34.5
Gorai.009G390900 Gossypium raimondii HOM05D000003 ORTHO05D000007 3.8e-07 59.3 100 37.0
Lj1g0012109 Lotus japonicus HOM05D000003 ORTHO05D000007 3.8e-07 59.3 102 33.3
Lj2g0002638 Lotus japonicus HOM05D000003 ORTHO05D000007 3.8e-07 59.3 126 32.5
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 3.8e-07 59.3 101 35.6
TPR.G17627 Trifolium pratense HOM05D000003 ORTHO05D000007 3.8e-07 59.3 103 34.0
TPR.G18288 Trifolium pratense HOM05D000003 ORTHO05D000006 3.8e-07 59.3 133 27.8
Atru.chr11.754 Acer truncatum HOM05D000003 ORTHO05D000007 4.9e-07 58.9 114 30.7
Cpa.g.sc281.5 Carica papaya HOM05D009428 ORTHO05D000007 4.9e-07 58.9 112 34.8
Cpa.g.sc4.197 Carica papaya HOM05D000003 ORTHO05D000007 4.9e-07 58.9 239 22.2
Dinv30689 Davidia involucrata HOM05D000003 ORTHO05D000007 4.9e-07 58.9 75 36.0
Gorai.004G148600 Gossypium raimondii HOM05D067991 ORTHO05D046996 4.9e-07 58.9 207 26.1
Lj6g0020901 Lotus japonicus HOM05D000003 ORTHO05D000007 4.9e-07 58.9 102 32.4
PSO339G4387 Papaver somniferum HOM05D000003 ORTHO05D000007 4.9e-07 58.9 117 31.6
TPR.G16044 Trifolium pratense HOM05D000003 ORTHO05D000007 4.9e-07 58.9 139 29.5
Gorai.005G084200 Gossypium raimondii HOM05D000003 ORTHO05D000007 6.4e-07 58.5 110 33.6
Lj2g0015907 Lotus japonicus HOM05D000003 ORTHO05D000007 6.4e-07 58.5 102 34.3
Lj6g0027241 Lotus japonicus HOM05D000473 ORTHO05D000007 6.4e-07 58.5 101 33.7
Atru.chr9.1215 Acer truncatum HOM05D000003 ORTHO05D000006 8.4e-07 58.2 105 35.2
Gohir.D10G151550 Gossypium hirsutum HOM05D015435 ORTHO05D020798 8.4e-07 58.2 57 43.9
Gorai.001G139500 Gossypium raimondii HOM05D000003 ORTHO05D000007 8.4e-07 58.2 127 33.9
Lj3g0011245 Lotus japonicus HOM05D000003 ORTHO05D000007 8.4e-07 58.2 101 34.7
PSO017G5897 Papaver somniferum HOM05D000003 ORTHO05D000007 8.4e-07 58.2 149 24.8
TPR.G24275 Trifolium pratense HOM05D000003 ORTHO05D000007 8.4e-07 58.2 140 30.0
Atru.chr11.84 Acer truncatum HOM05D000003 ORTHO05D000007 1.1e-06 57.8 67 35.8
arahy.Tifrunner.gnm1.ann1.KQZX4E Arachis hypogaea HOM05D000003 ORTHO05D000007 1.1e-06 57.8 168 26.8
Lj4g0014676 Lotus japonicus HOM05D000003 ORTHO05D000007 1.1e-06 57.8 101 32.7
PSO832G0039 Papaver somniferum HOM05D000003 ORTHO05D000007 1.1e-06 57.8 150 28.0
Prupe.2G097600 Prunus persica HOM05D000003 ORTHO05D000007 1.1e-06 57.8 123 28.5
QL08p065182 Quercus lobata HOM05D000003 ORTHO05D000007 1.1e-06 57.8 132 31.1
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-06 57.8 149 28.2
Atru.chr9.873 Acer truncatum HOM05D000003 ORTHO05D000007 1.4e-06 57.4 87 37.9
Lj5g0014385 Lotus japonicus HOM05D000003 ORTHO05D000007 1.4e-06 57.4 66 37.9
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 1.4e-06 57.4 125 29.6
QL04p037455 Quercus lobata HOM05D000003 ORTHO05D000007 1.4e-06 57.4 78 37.2
TPR.G23335 Trifolium pratense HOM05D000003 ORTHO05D000007 1.4e-06 57.4 100 35.0
TPR.G39739 Trifolium pratense HOM05D000003 ORTHO05D000007 1.4e-06 57.4 117 31.6
QL02p080468 Quercus lobata HOM05D000003 ORTHO05D000007 1.9e-06 57.0 129 31.0
Sabra06G0138800 Salix brachista HOM05D000003 ORTHO05D000007 1.9e-06 57.0 132 28.8
Gorai.011G168800 Gossypium raimondii HOM05D015435 ORTHO05D020798 2.4e-06 56.6 57 42.1
QL10p038312 Quercus lobata HOM05D000003 ORTHO05D000007 2.4e-06 56.6 80 37.5
Lj3g0019048 Lotus japonicus HOM05D000003 ORTHO05D000007 3.2e-06 56.2 139 30.2
QL03p025414 Quercus lobata HOM05D000003 ORTHO05D000007 3.2e-06 56.2 144 29.2
Sabra15G0091800 Salix brachista HOM05D000003 ORTHO05D000007 3.2e-06 56.2 84 34.5
TPR.G14601 Trifolium pratense HOM05D000003 ORTHO05D000007 3.2e-06 56.2 140 27.9
TPR.G18895 Trifolium pratense HOM05D000003 ORTHO05D000007 3.2e-06 56.2 135 34.8
TPR.G39703 Trifolium pratense HOM05D000003 ORTHO05D000007 3.2e-06 56.2 157 27.4
Atru.chr2.285 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-06 55.8 118 29.7
COL.COLO4_13283 Corchorus olitorius HOM05D000003 ORTHO05D000007 4.2e-06 55.8 122 28.7
Gorai.010G203300 Gossypium raimondii HOM05D015435 ORTHO05D020798 4.2e-06 55.8 60 46.7
LjContig00141g0023727 Lotus japonicus HOM05D013113 ORTHO05D000007 4.2e-06 55.8 121 29.8
Psat5g160400 Pisum sativum HOM05D000003 ORTHO05D000007 4.2e-06 55.8 62 41.9
QL01p046642 Quercus lobata HOM05D000003 ORTHO05D000007 4.2e-06 55.8 128 28.9
QL05p047662 Quercus lobata HOM05D000003 ORTHO05D000007 4.2e-06 55.8 78 34.6
RcHm_v2.0_Chr2g0171821 Rosa chinensis HOM05D000003 ORTHO05D000007 4.2e-06 55.8 85 35.3
Cpa.g.c33378.2 Carica papaya HOM05D000003 ORTHO05D000007 5.4e-06 55.5 110 32.7
Lj2g0006651 Lotus japonicus HOM05D000003 ORTHO05D000007 5.4e-06 55.5 100 35.0
QL02p014176 Quercus lobata HOM05D000003 ORTHO05D000007 5.4e-06 55.5 133 30.1
QL04p081254 Quercus lobata HOM05D000003 ORTHO05D000007 5.4e-06 55.5 99 35.4
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 5.4e-06 55.5 86 34.9
Cpa.g.sc2.282 Carica papaya HOM05D000003 ORTHO05D000007 7.1e-06 55.1 69 39.1
COL.COLO4_12097 Corchorus olitorius HOM05D000003 ORTHO05D000007 7.1e-06 55.1 120 32.5
Dinv07064 Davidia involucrata HOM05D000003 ORTHO05D000007 7.1e-06 55.1 120 25.8
Prupe.1G055400 Prunus persica HOM05D000003 ORTHO05D000007 7.1e-06 55.1 125 28.0
TPR.G15942 Trifolium pratense HOM05D000003 ORTHO05D000007 7.1e-06 55.1 66 39.4
TPR.G22161 Trifolium pratense HOM05D000003 ORTHO05D000007 7.1e-06 55.1 65 40.0
Lj4g0016016 Lotus japonicus HOM05D000003 ORTHO05D000007 9.3e-06 54.7 141 28.4
Prupe.3G109600 Prunus persica HOM05D000003 ORTHO05D000007 9.3e-06 54.7 107 28.0
TPR.G14379 Trifolium pratense HOM05D000003 ORTHO05D000007 9.3e-06 54.7 87 34.5
TPR.G29549 Trifolium pratense HOM05D000003 ORTHO05D000007 9.3e-06 54.7 69 36.2


User provided reference genes

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