Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 0.0e+00 1456.8 742 100.0
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 0.0e+00 1429.8 742 98.5
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 0.0e+00 1272.3 685 95.2
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 3.2e-240 835.5 705 66.8
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 2.8e-188 662.9 789 52.6
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 8.3e-172 608.2 423 75.7
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 2.1e-154 550.4 494 65.4
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 3.8e-132 476.5 717 46.4
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 3.3e-128 463.4 626 47.6
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.1e-123 448.4 597 49.2
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 4.2e-123 446.4 765 43.4
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 3.3e-120 436.8 549 50.1
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 9.7e-120 435.3 628 45.7
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 6.3e-119 432.6 710 44.5
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 9.0e-118 428.7 680 44.0
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 1.3e-116 424.9 715 42.1
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.2e-114 418.3 794 39.3
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.0e-113 415.2 535 49.2
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 2.0e-112 411.0 499 50.1
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 8.2e-111 405.6 906 36.1
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 3.4e-109 400.2 561 45.5
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 4.5e-109 399.8 583 46.7
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 7.7e-109 399.1 543 47.0
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 6.1e-106 389.4 671 41.1
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 3.3e-104 383.6 626 42.2
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 9.7e-104 382.1 678 40.9
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.1e-102 378.6 644 42.7
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 9.1e-102 375.6 494 48.0
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 6.5e-100 369.4 494 47.4
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 8.0e-98 362.5 651 40.6
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.0e-97 362.1 600 40.8
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.7e-92 344.7 503 44.7
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 3.8e-92 343.6 610 40.5
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 5.0e-92 343.2 546 42.3
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 5.0e-92 343.2 430 49.1
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 6.5e-92 342.8 491 44.8
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 8.5e-92 342.4 427 48.2
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 5.5e-91 339.7 494 45.1
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 1.2e-90 338.6 434 47.9
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 4.7e-90 336.7 540 43.9
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 3.0e-89 334.0 565 41.1
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 8.8e-89 332.4 323 57.6
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.2e-88 332.0 546 42.3
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.2e-88 332.0 546 42.3
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.2e-88 332.0 546 42.3
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.2e-88 332.0 332 57.8
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 1.5e-88 331.6 542 43.2
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 9.8e-88 328.9 493 43.2
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 6.3e-87 326.2 430 47.2
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 6.3e-87 326.2 538 42.8
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 8.3e-87 325.9 412 47.3
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 5.4e-86 323.2 541 42.3
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 4.5e-85 320.1 455 45.3
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 5.9e-85 319.7 405 48.1
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 1.3e-84 318.5 491 44.6
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.3e-84 318.5 513 41.9
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 2.9e-84 317.4 649 37.9
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 3.8e-84 317.0 560 41.6
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 6.5e-84 316.2 466 42.9
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 2.5e-83 314.3 429 47.3
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.5e-83 313.2 287 58.2
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 7.2e-83 312.8 507 42.0
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 9.4e-83 312.4 333 54.4
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 1.6e-82 311.6 430 45.3
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 2.7e-82 310.8 295 58.6
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 5.2e-81 306.6 535 40.2
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 6.8e-81 306.2 572 39.2
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 8.8e-81 305.8 462 44.6
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 7.5e-80 302.8 469 42.2
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 7.5e-80 302.8 478 42.5
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 4.1e-78 297.0 343 52.8
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 1.2e-77 295.4 656 35.8
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 1.6e-77 295.0 791 34.0
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 2.0e-77 294.7 694 35.0
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.5e-77 293.5 463 42.5
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 1.1e-75 288.9 557 37.9
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.9e-75 288.1 542 36.7
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.5e-75 287.7 667 35.5
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 3.3e-75 287.3 299 54.8
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 4.7e-74 283.5 523 40.3
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 4.7e-74 283.5 407 43.5
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 8.0e-74 282.7 407 44.2
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 1.8e-73 281.6 604 35.6
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 8.9e-73 279.3 627 35.4
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 1.2e-72 278.9 644 34.5
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 3.4e-72 277.3 593 34.9
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 6.3e-71 273.1 446 42.2
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.4e-70 271.9 595 34.3
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 1.4e-70 271.9 595 34.1
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 1.8e-70 271.6 321 51.4
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 9.2e-70 269.2 628 33.3
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 3.5e-69 267.3 485 39.2
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 1.3e-68 265.4 593 35.2
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 3.9e-68 263.8 696 32.8
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.1e-67 262.3 602 37.2
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.5e-67 261.9 464 38.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.9e-67 261.5 498 38.0
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 3.6e-66 257.3 414 40.1
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 1.7e-63 248.4 254 55.1
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 2.2e-63 248.1 419 38.7
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 3.7e-63 247.3 227 58.1
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 1.2e-61 242.3 495 36.0
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 7.8e-61 239.6 398 38.7
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.7e-60 238.4 247 54.7
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 1.5e-59 235.3 404 39.9
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 7.3e-59 233.0 445 36.9
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 2.2e-55 221.5 300 43.7
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.8e-49 201.8 305 44.3
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 1.5e-48 198.7 266 46.2
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.9e-44 184.1 276 40.9
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.9e-43 181.8 274 39.8
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 3.6e-42 177.6 417 34.3
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 1.4e-38 165.6 488 34.8
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 2.7e-37 161.4 372 33.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.1e-35 156.0 185 49.2
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 1.5e-35 155.6 412 29.1
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 6.2e-34 150.2 456 29.8
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 8.1e-34 149.8 278 36.7
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-33 149.4 488 29.3
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 3.1e-33 147.9 211 44.5
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.3e-27 127.9 106 62.3
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 2.0e-24 118.6 230 37.0
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 9.9e-24 116.3 414 32.1
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.1e-19 102.8 254 34.3
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.8e-17 95.5 267 30.7
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.4e-17 95.1 88 53.4
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 4.5e-16 90.9 359 30.6
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 5.8e-16 90.5 264 31.1
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 4.6e-13 80.9 239 28.9
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 3.9e-12 77.8 187 36.9
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.5e-11 75.9 312 27.6
Thhalv10016741m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 1.5e-11 75.9 268 29.1
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 1.9e-11 75.5 110 45.5
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 4.3e-11 74.3 259 30.9
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.1e-10 72.0 47 74.5
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 2.1e-10 72.0 61 59.0
AL4G41050 Arabidopsis lyrata HOM05D004311 ORTHO05D005145 3.7e-10 71.2 210 30.5
CARHR137580 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.8e-09 68.9 257 29.6
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 9.0e-09 66.6 213 31.5
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 1.5e-08 65.9 110 40.9
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 2.0e-08 65.5 141 38.3
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 3.4e-08 64.7 148 35.8
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 7.6e-08 63.5 70 44.3
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 1.0e-07 63.2 138 35.5
Sp6g02310 Schrenkiella parvula HOM05D004311 ORTHO05D005145 1.3e-07 62.8 175 28.6
SEGI_08315 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 6.5e-07 60.5 52 55.8
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 3.2e-06 58.2 181 30.9
AT2G42510 Arabidopsis thaliana HOM05D004311 ORTHO05D026863 4.2e-06 57.8 244 26.2


User provided reference genes

Program Settings