Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G093600 Gossypium raimondii HOM05D010331 ORTHO05D000001 4.2e-60 234.6 124 100.0
Gorai.006G054400 Gossypium raimondii HOM05D000006 ORTHO05D000001 5.3e-23 111.3 106 59.4
Gorai.001G222900 Gossypium raimondii HOM05D000006 ORTHO05D000001 7.7e-22 107.5 106 56.6
Gorai.004G068900 Gossypium raimondii HOM05D000006 ORTHO05D000001 2.5e-20 102.4 127 49.6
Gohir.D09G053350 Gossypium hirsutum HOM05D000006 ORTHO05D000001 2.7e-19 99.0 92 59.8
Gorai.002G177800 Gossypium raimondii HOM05D010331 ORTHO05D000001 2.7e-19 99.0 87 62.1
Gorai.003G168400 Gossypium raimondii HOM05D000006 ORTHO05D000001 4.7e-19 98.2 91 59.3
Gorai.012G038500 Gossypium raimondii HOM05D010331 ORTHO05D000001 6.1e-19 97.8 101 54.5
Gorai.002G106200 Gossypium raimondii HOM05D000006 ORTHO05D000001 1.4e-18 96.7 83 62.7
Gorai.005G090700 Gossypium raimondii HOM05D000006 ORTHO05D000001 1.8e-18 96.3 92 56.5
Gorai.011G188300 Gossypium raimondii HOM05D000006 ORTHO05D000001 1.8e-18 96.3 101 52.5
Gorai.001G251200 Gossypium raimondii HOM05D000006 ORTHO05D000001 3.0e-18 95.5 90 60.0
Gorai.010G168500 Gossypium raimondii HOM05D000006 ORTHO05D000001 4.0e-18 95.1 96 54.2
CANSAT56G1315 Cannabis sativa HOM05D000006 ORTHO05D000001 1.1e-15 87.0 113 44.2
CANSAT11G1292 Cannabis sativa HOM05D000006 ORTHO05D000001 1.8e-15 86.3 131 38.2
Gorai.011G157900 Gossypium raimondii HOM05D000006 ORTHO05D000001 3.1e-15 85.5 97 48.5
CANSAT54G1066 Cannabis sativa HOM05D000006 ORTHO05D000001 9.1e-15 84.0 128 43.8
CANSAT54G2260 Cannabis sativa HOM05D000006 ORTHO05D000001 1.2e-14 83.6 108 42.6
CANSAT56G2615 Cannabis sativa HOM05D000006 ORTHO05D000001 1.6e-14 83.2 106 44.3
CANSAT01G1590 Cannabis sativa HOM05D000006 ORTHO05D000001 2.0e-14 82.8 111 41.4
CANSAT35G0184 Cannabis sativa HOM05D000006 ORTHO05D000001 3.5e-14 82.0 128 43.8
CANSAT80G0902 Cannabis sativa HOM05D000006 ORTHO05D000001 3.5e-14 82.0 116 39.7
Gorai.010G182200 Gossypium raimondii HOM05D000006 ORTHO05D000001 4.5e-14 81.6 80 56.2
CANSAT78G0422 Cannabis sativa HOM05D000006 ORTHO05D000001 1.3e-13 80.1 113 40.7
CANSAT80G1572 Cannabis sativa HOM05D000006 ORTHO05D000001 1.7e-13 79.7 131 37.4
Gorai.008G081000 Gossypium raimondii HOM05D000006 ORTHO05D000001 1.7e-13 79.7 80 57.5
CANSAT56G1128 Cannabis sativa HOM05D000006 ORTHO05D000001 3.8e-13 78.6 128 39.1
CANSAT56G1815 Cannabis sativa HOM05D000006 ORTHO05D000001 3.8e-13 78.6 128 39.8
Gohir.D09G099050 Gossypium hirsutum HOM05D000006 ORTHO05D000001 8.5e-13 77.4 72 56.9
CANSAT21G1245 Cannabis sativa HOM05D000006 ORTHO05D000001 1.5e-12 76.6 120 40.0
Gorai.002G167600 Gossypium raimondii HOM05D000006 ORTHO05D000001 2.5e-12 75.9 103 48.5
Oeu012266.1 Olea europaea HOM05D000006 ORTHO05D000001 9.4e-12 73.9 137 35.0
Gorai.002G159800 Gossypium raimondii HOM05D014089 ORTHO05D000001 1.2e-11 73.6 126 42.9
TWI53G0903 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 1.6e-11 73.2 115 38.3
Psat0s1379g0040 Pisum sativum HOM05D000006 ORTHO05D000001 2.7e-11 72.4 136 33.1
CANSAT21G1937 Cannabis sativa HOM05D000006 ORTHO05D000001 3.6e-11 72.0 136 35.3
CiPaw.06G149500 Carya illinoinensis HOM05D017580 ORTHO05D000001 3.6e-11 72.0 140 36.4
MELO3C032096.2 Cucumis melo HOM05D000006 ORTHO05D000001 8.0e-11 70.9 125 35.2
QL05p038736 Quercus lobata HOM05D011350 ORTHO05D000001 1.0e-10 70.5 105 37.1
QL11p020175 Quercus lobata HOM05D011350 ORTHO05D000370 1.8e-10 69.7 105 38.1
TWI39G0759 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 1.8e-10 69.7 128 37.5
Gorai.011G153600 Gossypium raimondii HOM05D010331 ORTHO05D000001 2.3e-10 69.3 73 49.3
CSS0039424 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 3.0e-10 68.9 79 46.8
Gorai.001G230700 Gossypium raimondii HOM05D000006 ORTHO05D000001 4.0e-10 68.6 71 50.7
Gorai.006G116000 Gossypium raimondii HOM05D010331 ORTHO05D000001 4.0e-10 68.6 72 54.2
CSS0028883 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.2e-09 67.0 128 36.7
Gorai.010G160800 Gossypium raimondii HOM05D000006 ORTHO05D000001 1.2e-09 67.0 67 59.7
CANSAT64G0990 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-09 66.2 92 39.1
MELO3C008402.2 Cucumis melo HOM05D000006 ORTHO05D000001 2.0e-09 66.2 125 33.6
Oeu012880.1 Olea europaea HOM05D014089 ORTHO05D011268 2.0e-09 66.2 123 35.0
TWI09G0578 Tripterygium wilfordii HOM05D000006 ORTHO05D000001 2.0e-09 66.2 122 35.2
CSS0008448 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 3.4e-09 65.5 128 35.2
CANSAT80G1908 Cannabis sativa HOM05D000006 ORTHO05D000001 3.4e-09 65.5 96 36.5
MELO3C028877.2 Cucumis melo HOM05D003454 ORTHO05D000001 3.4e-09 65.5 132 33.3
CSS0033845 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 4.4e-09 65.1 128 35.2
CSS0050272 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 5.7e-09 64.7 128 35.2
Oeu042177.1 Olea europaea HOM05D014089 ORTHO05D011268 7.5e-09 64.3 123 34.1
QL04p019703 Quercus lobata HOM05D000006 ORTHO05D000001 1.3e-08 63.5 136 31.6
AL123U10020 Arabidopsis lyrata HOM05D012795 ORTHO05D014047 1.7e-08 63.2 129 30.2
CSS0043824 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.7e-08 63.2 128 33.6
MELO3C029602.2 Cucumis melo HOM05D000006 ORTHO05D000001 1.7e-08 63.2 126 34.1
Gorai.012G106600 Gossypium raimondii HOM05D014089 ORTHO05D000001 1.7e-08 63.2 48 66.7
ClCG08G000880 Citrullus lanatus HOM05D009337 ORTHO05D012163 2.2e-08 62.8 101 40.6
ClCG09G015530 Citrullus lanatus HOM05D000027 ORTHO05D000066 2.2e-08 62.8 131 33.6
CSS0004288 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 6.3e-08 61.2 128 32.8
Gorai.004G099700 Gossypium raimondii HOM05D000006 ORTHO05D000001 8.3e-08 60.8 88 46.6
CSS0038264 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.1e-07 60.5 125 36.0
MELO3C018244.2 Cucumis melo HOM05D000006 ORTHO05D000001 1.1e-07 60.5 123 34.1
Sopen05g008110 Solanum pennellii HOM05D000006 ORTHO05D000001 2.4e-07 59.3 138 29.7
FvH4_5g12471 Fragaria vesca HOM05D000002 ORTHO05D000001 3.1e-07 58.9 102 36.3
MELO3C003289.2 Cucumis melo HOM05D000006 ORTHO05D000001 5.4e-07 58.2 123 33.3
Hund15273 Selenicereus undatus HOM05D000006 ORTHO05D000001 5.4e-07 58.2 131 28.2
QL04p020058 Quercus lobata HOM05D011350 ORTHO05D000001 7.0e-07 57.8 131 33.6
RcHm_v2.0_Chr4g0421211 Rosa chinensis HOM05D000006 ORTHO05D000001 7.0e-07 57.8 118 30.5
CSS0030083 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 9.2e-07 57.4 109 34.9
RcHm_v2.0_Chr6g0259691 Rosa chinensis HOM05D000002 ORTHO05D000001 9.2e-07 57.4 102 35.3
Rhsim07G0003700 Rhododendron simsii HOM05D000006 ORTHO05D000001 1.2e-06 57.0 83 39.8
Potri.012G061333 Populus trichocarpa HOM05D062554 ORTHO05D011268 1.6e-06 56.6 135 33.3
FvH4_3g21021 Fragaria vesca HOM05D000002 ORTHO05D000001 2.0e-06 56.2 121 33.9
RcHm_v2.0_Chr3g0456701 Rosa chinensis HOM05D000006 ORTHO05D000001 2.7e-06 55.8 121 27.3
Sopen12g017800 Solanum pennellii HOM05D000006 ORTHO05D000001 2.7e-06 55.8 134 29.1
CSS0042465 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 3.5e-06 55.5 129 31.8
Gorai.007G269000 Gossypium raimondii HOM05D000006 ORTHO05D000001 3.5e-06 55.5 43 58.1
RcHm_v2.0_Chr5g0064041 Rosa chinensis HOM05D000002 ORTHO05D000001 3.5e-06 55.5 102 35.3
Hund25732 Selenicereus undatus HOM05D000006 ORTHO05D000001 3.5e-06 55.5 82 31.7
Atru.chr12.2495 Acer truncatum HOM05D000006 ORTHO05D000001 4.5e-06 55.1 95 30.5
Sopen02g010910 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-06 55.1 134 29.1
Sopen03g006660 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-06 55.1 134 29.1
Sopen04g001900 Solanum pennellii HOM05D001270 ORTHO05D001099 4.5e-06 55.1 134 29.1
Sopen06g011700 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-06 55.1 134 29.1
Sopen07g012170 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-06 55.1 134 29.1
Sopen09g019260 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-06 55.1 134 29.1
Sopen09g025630 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-06 55.1 134 29.1
Sopen10g006410 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-06 55.1 134 29.1
Sopen11g022050 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-06 55.1 134 29.1
CANSAT25G2878 Cannabis sativa HOM05D010331 ORTHO05D000001 7.7e-06 54.3 115 32.2
QL09p034643 Quercus lobata HOM05D000273 ORTHO05D000198 7.7e-06 54.3 75 40.0


User provided reference genes

Program Settings