Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G088300 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.9e-26 121.7 61 100.0
Gohir.D09G064700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.6e-25 118.6 61 96.7
Gohir.D04G064600 Gossypium hirsutum HOM05D006167 ORTHO05D007635 6.9e-24 113.2 61 93.4
Gorai.012G072500 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.2e-23 112.5 61 93.4
Gohir.D02G050200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.6e-23 111.3 61 91.8
Gohir.D11G199000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.7e-22 108.6 61 88.5
Gorai.007G213200 Gossypium raimondii HOM05D006167 ORTHO05D007635 6.5e-22 106.7 61 88.5
Gorai.005G130300 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.4e-21 105.5 61 86.9
Gohir.D02G123800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.9e-21 105.1 61 86.9
Gorai.004G118700 Gossypium raimondii HOM05D006167 ORTHO05D007635 3.2e-21 104.4 61 86.9
Gorai.011G155100 Gossypium raimondii HOM05D006167 ORTHO05D007635 3.2e-21 104.4 61 88.5
Gohir.D08G046000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 4.2e-21 104.0 60 88.3
Gorai.008G094700 Gossypium raimondii HOM05D006167 ORTHO05D007635 4.2e-21 104.0 60 88.3
Gohir.D08G110800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.2e-20 102.4 61 85.2
Gohir.D05G314750 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.6e-20 102.1 61 85.2
Gorai.009G336300 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.6e-20 102.1 61 85.2
Gohir.D10G139400 Gossypium hirsutum HOM05D006167 ORTHO05D007635 7.9e-20 99.8 61 83.6
Gorai.008G097400 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.0e-19 99.4 59 81.4
Thecc.04G269200 Theobroma cacao HOM05D006167 ORTHO05D007635 6.7e-19 96.7 61 82.0
Gohir.D01G140700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 8.7e-19 96.3 61 82.0
Gohir.D04G080000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.9e-18 95.1 56 87.5
Gohir.D12G087200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.5e-18 94.7 59 78.0
Duzib052G0384 Durio zibethinus HOM05D006167 ORTHO05D007635 5.7e-18 93.6 61 78.7
Duzib052G0895 Durio zibethinus HOM05D006167 ORTHO05D007635 5.7e-18 93.6 61 78.7
Duzib266G0005 Durio zibethinus HOM05D006167 ORTHO05D007635 5.7e-18 93.6 61 78.7
Gorai.010G122300 Gossypium raimondii HOM05D006167 ORTHO05D007635 7.4e-18 93.2 53 84.9
Gohir.D03G098800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 3.7e-17 90.9 61 78.7
COL.COLO4_16007 Corchorus olitorius HOM05D006167 ORTHO05D007635 1.1e-16 89.4 58 79.3
Gorai.003G103700 Gossypium raimondii HOM05D006167 ORTHO05D007635 4.1e-16 87.4 61 75.4
Cpa.g.sc59.38 Carica papaya HOM05D006167 ORTHO05D007635 7.7e-15 83.2 63 69.8
CiPaw.01G175200 Carya illinoinensis HOM05D006167 ORTHO05D007635 1.9e-13 78.6 63 69.8
CSS0017011 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 1.2e-12 75.9 63 65.1
CSS0046609 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 1.2e-12 75.9 63 65.1
ClCG06G007470 Citrullus lanatus HOM05D006167 ORTHO05D007635 1.6e-12 75.5 63 65.1
Hma1.2p1_0112F.1_g054980 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 4.6e-12 73.9 62 64.5
Prupe.1G052700 Prunus persica HOM05D006167 ORTHO05D007635 6.1e-12 73.6 63 66.7
Cfa014825 Carpinus fangiana HOM05D006167 ORTHO05D007635 7.9e-12 73.2 60 68.3
Potri.008G174000 Populus trichocarpa HOM05D006167 ORTHO05D007635 1.0e-11 72.8 63 63.5
Atru.chr4.1872 Acer truncatum HOM05D006167 ORTHO05D007635 1.4e-11 72.4 63 63.5
CsaV3_2G012210 Cucumis sativus L. HOM05D006167 ORTHO05D007635 1.4e-11 72.4 63 63.5
MELO3C023070.2 Cucumis melo HOM05D006167 ORTHO05D007635 1.8e-11 72.0 63 61.9
Potri.010G063100 Populus trichocarpa HOM05D006167 ORTHO05D007635 1.8e-11 72.0 63 63.5
CARHR219150 Cardamine hirsuta HOM05D006167 ORTHO05D007635 3.0e-11 71.2 61 60.7
Sed0006558 Sechium edule HOM05D006167 ORTHO05D007635 5.1e-11 70.5 63 60.3
TWI09G0967 Tripterygium wilfordii HOM05D006167 ORTHO05D007635 5.1e-11 70.5 63 58.7
AL7G43090 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 6.7e-11 70.1 63 58.7
Dinv29784 Davidia involucrata HOM05D006167 ORTHO05D007635 6.7e-11 70.1 63 63.5
Nn1g03031 Nelumbo nucifera HOM05D006167 ORTHO05D007635 6.7e-11 70.1 63 60.3
TAR362G1146 Trochodendron aralioides HOM05D006167 ORTHO05D007635 8.8e-11 69.7 63 60.3
AL5G12040 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 1.1e-10 69.3 63 60.3
AL5G12300 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 1.1e-10 69.3 63 60.3
AT4G13520 Arabidopsis thaliana HOM05D006167 ORTHO05D007635 1.5e-10 68.9 63 57.1
Gorai.001G226800 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.5e-10 68.9 33 97.0
THA.LOC109117012 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 1.5e-10 68.9 63 55.6
Eucgr.H02882 Eucalyptus grandis HOM05D006167 ORTHO05D007635 2.0e-10 68.6 64 60.9
Glyma.20G081600 Glycine max HOM05D006167 ORTHO05D007635 2.0e-10 68.6 58 67.2
Aa31LG9G4150 Aethionema arabicum HOM05D006167 ORTHO05D007635 2.6e-10 68.2 64 59.4
Actinidia32969 Actinidia chinensis HOM05D006167 ORTHO05D007635 4.4e-10 67.4 65 56.9
BcaB04g17822 Brassica carinata HOM05D006167 ORTHO05D007635 4.4e-10 67.4 63 55.6
BcaC07g37498 Brassica carinata HOM05D006167 ORTHO05D007635 4.4e-10 67.4 63 55.6
A08p07960 Brassica napus HOM05D006167 ORTHO05D007635 4.4e-10 67.4 63 55.6
BolC8t47817H Brassica oleracea HOM05D006167 ORTHO05D007635 4.4e-10 67.4 63 55.6
BraA08t32818Z Brassica rapa HOM05D006167 ORTHO05D007635 4.4e-10 67.4 63 55.6
Carub.0007s2902 Capsella rubella HOM05D006167 ORTHO05D007635 4.4e-10 67.4 63 57.1
Dinv18834 Davidia involucrata HOM05D006167 ORTHO05D007635 4.4e-10 67.4 61 60.7
Lalb_Chr03g0036881 Lupinus albus HOM05D006167 ORTHO05D007635 4.4e-10 67.4 63 61.9
SHI00872 Sapria himalayana HOM05D006167 ORTHO05D007635 5.7e-10 67.0 61 59.0
Sp7g11110 Schrenkiella parvula HOM05D006167 ORTHO05D007635 5.7e-10 67.0 63 55.6
Hma1.2p1_0432F.1_g151790 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 7.4e-10 66.6 61 60.7
Thhalv10026745m.g Eutrema salsugineum HOM05D006167 ORTHO05D007635 9.7e-10 66.2 63 57.1
arahy.Tifrunner.gnm1.ann1.C36CE0 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.3e-09 65.9 44 77.3
PGR004G2513 Punica granatum HOM05D006167 ORTHO05D007635 1.3e-09 65.9 63 57.1
THA.LOC109116489 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 1.3e-09 65.9 63 54.0
THA.LOC109116515 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 1.3e-09 65.9 63 54.0
RcHm_v2.0_Chr4g0396111 Rosa chinensis HOM05D006167 ORTHO05D007635 1.7e-09 65.5 61 57.4
Hma1.2p1_0144F.1_g065120 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 2.8e-09 64.7 60 60.0
Nitab4.5_0000867g0070 Nicotiana tabacum HOM05D006167 ORTHO05D007635 6.3e-09 63.5 64 59.4
EL10Ac3g06721 Beta vulgaris HOM05D006167 ORTHO05D007635 8.2e-09 63.2 64 56.2
Lj4g0015547 Lotus japonicus HOM05D006167 ORTHO05D007635 8.2e-09 63.2 60 58.3
Phvul.007G232600 Phaseolus vulgaris HOM05D006167 ORTHO05D007635 1.8e-08 62.0 56 58.9
CANSAT78G0928 Cannabis sativa HOM05D006167 ORTHO05D007635 3.1e-08 61.2 63 60.3
Oeu012938.1 Olea europaea HOM05D006167 ORTHO05D007635 3.1e-08 61.2 65 52.3
Cc03_g06850 Coffea canephora HOM05D006167 ORTHO05D007635 4.1e-08 60.8 67 56.7
Gorai.002G173000 Gossypium raimondii HOM05D006167 ORTHO05D007635 4.1e-08 60.8 37 81.1
Solyc12g097040.1 Solanum lycopersicum HOM05D006167 ORTHO05D007635 5.3e-08 60.5 65 53.8
CANSAT54G0143 Cannabis sativa HOM05D006167 ORTHO05D007635 6.9e-08 60.1 58 63.8
HanXRQChr13g0410431 Helianthus annuus HOM05D006167 ORTHO05D007635 6.9e-08 60.1 65 53.8
CAN.G566.4 Capsicum annuum HOM05D006167 ORTHO05D007635 9.1e-08 59.7 67 50.7
Gohir.D10G116001 Gossypium hirsutum HOM05D021756 ORTHO05D018943 1.5e-07 58.9 30 93.3
Gorai.011G127900 Gossypium raimondii HOM05D021756 ORTHO05D018943 1.5e-07 58.9 30 93.3
vmacro15491 Vaccinium macrocarpon HOM05D006167 ORTHO05D007635 1.5e-07 58.9 69 50.7
vmacro22827 Vaccinium macrocarpon HOM05D006167 ORTHO05D007635 1.5e-07 58.9 69 50.7
FAN12G1688 Fragaria x ananassa HOM05D006167 ORTHO05D007635 4.5e-07 57.4 57 56.1
FAN17G0547 Fragaria x ananassa HOM05D006167 ORTHO05D007635 4.5e-07 57.4 57 56.1
Hma1.2p1_0014F.1_g009760 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 5.9e-07 57.0 60 55.0
Rhsim09G0043900 Rhododendron simsii HOM05D006167 ORTHO05D007635 5.9e-07 57.0 44 68.2
FvH4_4g05200 Fragaria vesca HOM05D006167 ORTHO05D007635 1.3e-06 55.8 57 54.4
Gohir.D03G055966 Gossypium hirsutum HOM05D021756 ORTHO05D018943 1.7e-06 55.5 30 90.0
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.9e-06 54.7 25 100.0
Psat6g109400 Pisum sativum HOM05D006167 ORTHO05D007635 6.5e-06 53.5 44 54.5
Aqoxy5G00097 Aquilegia oxysepala HOM05D006167 ORTHO05D007635 8.5e-06 53.1 63 52.4
Lsat_1_v5_gn_1_76160 Lactuca sativa HOM05D006167 ORTHO05D007635 8.5e-06 53.1 62 51.6
Lsat_1_v5_gn_2_42001 Lactuca sativa HOM05D006167 ORTHO05D007635 8.5e-06 53.1 65 49.2


User provided reference genes

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