Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G083800 Gossypium raimondii HOM05D000533 ORTHO05D001069 1.9e-65 252.3 122 100.0
Eucgr.K01620 Eucalyptus grandis HOM05D000533 ORTHO05D001069 2.5e-41 172.2 125 68.8
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 2.5e-41 172.2 125 69.6
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 7.3e-41 170.6 125 68.0
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 7.3e-41 170.6 125 68.0
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 1.6e-40 169.5 125 68.8
FAN01G2373 Fragaria x ananassa HOM05D000533 ORTHO05D001069 1.6e-40 169.5 125 68.8
AL9U11960 Arabidopsis lyrata HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
ATCG01110 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
C05p53840 Brassica napus HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
C07p33470 Brassica napus HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
C09p40300 Brassica napus HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
BolSC29t60550H Brassica oleracea HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
BolSC37t60797H Brassica oleracea HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
BolSC44t60826H Brassica oleracea HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
BolSC45t60905H Brassica oleracea HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
BraSC143t45656Z Brassica rapa HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
BraSC25t45914Z Brassica rapa HOM05D000533 ORTHO05D001069 4.7e-40 167.9 125 68.0
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 1.1e-39 166.8 125 68.0
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.4e-39 166.4 126 67.5
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.4e-39 166.4 126 67.5
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.3e-39 165.6 125 68.0
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.3e-39 165.6 125 68.0
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.3e-39 165.6 125 68.0
SalBow1G1175 Salvia bowleyana HOM05D000533 ORTHO05D001069 5.2e-39 164.5 125 68.0
PGSC0003DMG401008783 Solanum tuberosum HOM05D000533 ORTHO05D001069 5.2e-39 164.5 125 67.2
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 6.8e-39 164.1 124 66.9
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 6.8e-39 164.1 125 67.2
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 1.2e-38 163.3 125 68.0
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 2.6e-38 162.2 125 66.4
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 3.4e-38 161.8 127 66.1
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 3.4e-38 161.8 127 66.1
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 3.4e-38 161.8 125 66.4
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 3.4e-38 161.8 125 66.4
RhsimPtG0005000 Rhododendron simsii HOM05D000533 ORTHO05D001069 5.8e-38 161.0 125 66.4
BraSC59t46530Z Brassica rapa HOM05D000533 ORTHO05D001069 7.6e-38 160.6 121 67.8
Sed0014804 Sechium edule HOM05D000533 ORTHO05D001069 7.6e-38 160.6 125 65.6
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 7.6e-38 160.6 125 65.6
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 9.9e-38 160.2 125 65.6
AUR62028573 Chenopodium quinoa HOM05D000533 ORTHO05D001069 3.7e-37 158.3 125 65.6
Psat0s1920g0160 Pisum sativum HOM05D000533 ORTHO05D001069 1.4e-36 156.4 125 62.4
AUR62043262 Chenopodium quinoa HOM05D000533 ORTHO05D001069 2.4e-36 155.6 125 64.0
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 4.1e-36 154.8 125 64.0
unitig_91.g26523 Utricularia gibba HOM05D000533 ORTHO05D001069 5.4e-36 154.5 125 63.2
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 7.1e-36 154.1 126 63.5
Solyc00g500280.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 7.1e-36 154.1 118 64.4
HanXRQChr09g0251511 Helianthus annuus HOM05D000533 ORTHO05D001069 9.2e-36 153.7 125 64.0
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 1.2e-35 153.3 125 64.0
Lsat_1_v5_gn_9_49240 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-35 153.3 125 64.0
BraSC59t46554Z Brassica rapa HOM05D000533 ORTHO05D001069 2.7e-35 152.1 115 67.0
C02p28810 Brassica napus HOM05D000533 ORTHO05D001069 4.6e-35 151.4 124 62.9
Nitab4.5_0007400g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 6.0e-35 151.0 127 64.6
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 7.8e-35 150.6 119 64.7
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 3.0e-34 148.7 114 64.9
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 3.0e-34 148.7 114 64.9
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 3.0e-34 148.7 114 64.9
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 3.0e-34 148.7 114 64.9
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 6.6e-34 147.5 119 63.9
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 8.6e-34 147.1 126 60.3
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 8.6e-34 147.1 126 60.3
SEGI_36880 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 3.3e-33 145.2 125 60.8
SEGI_41539 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 3.3e-33 145.2 125 60.8
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 7.3e-33 144.1 125 61.6
Thecc.01G108100 Theobroma cacao HOM05D000533 ORTHO05D001069 1.2e-32 143.3 81 80.2
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 3.6e-32 141.7 113 64.6
Sed0009234 Sechium edule HOM05D000533 ORTHO05D001069 4.7e-32 141.4 125 62.4
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.1e-31 140.2 122 61.5
CAN.G1045.9 Capsicum annuum HOM05D000533 ORTHO05D001069 2.4e-31 139.0 116 61.2
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 8.9e-31 137.1 119 57.1
Sed0015694 Sechium edule HOM05D000533 ORTHO05D001069 8.9e-31 137.1 121 58.7
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 1.2e-30 136.7 116 62.1
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 4.4e-30 134.8 114 62.3
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 4.4e-30 134.8 114 62.3
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 4.4e-30 134.8 114 62.3
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 4.4e-30 134.8 114 62.3
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 4.4e-30 134.8 114 62.3
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 4.4e-30 134.8 114 62.3
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 4.4e-30 134.8 114 62.3
Mapoly0048s0043 Marchantia polymorpha HOM05D000533 ORTHO05D001069 3.8e-29 131.7 125 56.8
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 2.1e-27 125.9 126 57.1
Psat7g126800 Pisum sativum HOM05D000533 ORTHO05D001069 1.7e-26 122.9 80 70.0
MELO3C027054.2 Cucumis melo HOM05D000533 ORTHO05D001069 2.5e-25 119.0 73 74.0
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 3.3e-25 118.6 99 62.6
Nitab4.5_0000843g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 7.3e-25 117.5 114 58.8
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 9.6e-25 117.1 136 48.5
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 1.3e-24 116.7 78 70.5
Peaxi162Scf00030g02114 Petunia axillaris HOM05D000533 ORTHO05D001069 8.1e-24 114.0 68 77.9
arahy.Tifrunner.gnm1.ann1.G8ZYC2 Arachis hypogaea HOM05D000533 ORTHO05D001069 1.4e-23 113.2 81 66.7
SMO086G0065 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 2.4e-23 112.5 125 52.0
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 5.3e-23 111.3 73 72.6
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 9.0e-23 110.5 89 61.8
Sed0022513 Sechium edule HOM05D000533 ORTHO05D001069 1.5e-22 109.8 91 61.5
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 5.8e-22 107.8 70 71.4
Sc02g0003430 Simmondsia chinensis HOM05D000533 ORTHO05D001069 7.6e-22 107.5 67 74.6
Solyc10g047400.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 7.6e-22 107.5 74 67.6
Gohir.A13G086335 Gossypium hirsutum HOM05D000533 ORTHO05D001069 9.9e-22 107.1 58 84.5
Eucgr.B00847 Eucalyptus grandis HOM05D000533 ORTHO05D001069 2.9e-21 105.5 73 68.5
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 3.2e-20 102.1 59 79.7
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 3.2e-20 102.1 59 79.7
arahy.Tifrunner.gnm1.ann1.URY1CV Arachis hypogaea HOM05D000533 ORTHO05D011117 4.2e-20 101.7 59 79.7
C09p40120 Brassica napus HOM05D000890 ORTHO05D000697 9.3e-20 100.5 59 78.0
EL10Ac9g21011 Beta vulgaris HOM05D000533 ORTHO05D001069 1.6e-19 99.8 59 78.0
Nitab4.5_0001478g0210 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.6e-19 99.8 59 79.7
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 2.1e-19 99.4 59 79.7
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 2.1e-19 99.4 59 79.7
arahy.Tifrunner.gnm1.ann1.AQ37G4 Arachis hypogaea HOM05D000533 ORTHO05D001069 2.7e-19 99.0 118 52.5
COL.COLO4_01565 Corchorus olitorius HOM05D000533 ORTHO05D001069 2.3e-18 95.9 49 87.8
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 6.6e-18 94.4 59 74.6
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 6.6e-18 94.4 59 74.6
SEGI_11816 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.1e-17 93.6 67 65.7
SEGI_26586 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.1e-17 93.6 67 65.7
Solyc08g022150.2 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.9e-17 92.8 56 75.0
GSVIVG01029925001 Vitis vinifera HOM05D000533 ORTHO05D001069 7.3e-17 90.9 57 75.4
Gohir.D04G096580 Gossypium hirsutum HOM05D000533 ORTHO05D001069 8.1e-16 87.4 80 58.8
ClCG10G006000 Citrullus lanatus HOM05D000533 ORTHO05D001069 1.1e-15 87.0 48 81.2
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.4e-15 86.7 122 47.5
Gorai.004G123700 Gossypium raimondii HOM05D000533 ORTHO05D001069 2.4e-15 85.9 90 55.6
HanXRQChr00c0504g0575321 Helianthus annuus HOM05D000533 ORTHO05D001069 5.3e-15 84.7 50 78.0
CAN.G30.7 Capsicum annuum HOM05D000533 ORTHO05D001069 6.9e-15 84.3 47 80.9
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 2.0e-14 82.8 47 80.9
BolSC29t60510H Brassica oleracea HOM05D000533 ORTHO05D001069 2.6e-14 82.4 47 78.7
BolC2t10601H Brassica oleracea HOM05D000533 ORTHO05D001069 4.5e-14 81.6 46 80.4
BolSC35t60708H Brassica oleracea HOM05D000533 ORTHO05D001069 4.5e-14 81.6 46 80.4
Nitab4.5_0006502g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.3e-13 80.1 47 80.9
Nn1g08631 Nelumbo nucifera HOM05D000533 ORTHO05D001069 6.4e-13 77.8 45 77.8
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 2.4e-12 75.9 46 76.1
MELO3C031837.2 Cucumis melo HOM05D000533 ORTHO05D001069 9.3e-12 73.9 45 71.1
CAN.G127.9 Capsicum annuum HOM05D000533 ORTHO05D001069 1.2e-11 73.6 46 73.9
Gohir.D08G108108 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.6e-11 73.2 91 47.3
Lalb_Chr18g0049411 Lupinus albus HOM05D000533 ORTHO05D001069 1.6e-11 73.2 125 40.8
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.6e-11 73.2 45 77.8
Nn1g08632 Nelumbo nucifera HOM05D000533 ORTHO05D001069 2.1e-11 72.8 70 55.7
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.1e-11 72.8 115 44.3
Haze_22013 Corylus avellana HOM05D000001 ORTHO05D000003 1.3e-10 70.1 104 42.3
Peaxi162Scf00654g00052 Petunia axillaris HOM05D000533 ORTHO05D001069 1.5e-09 66.6 105 43.8
Solyc07g032420.3 Solanum lycopersicum HOM05D000533 ORTHO05D001069 4.3e-09 65.1 81 45.7
Gorai.011G052200 Gossypium raimondii HOM05D000533 ORTHO05D001069 9.6e-09 63.9 34 85.3
Gorai.006G101200 Gossypium raimondii HOM05D000533 ORTHO05D001069 4.0e-07 58.5 35 77.1
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 5.3e-07 58.2 100 37.0
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 2.6e-06 55.8 30 76.7
Lsat_1_v5_gn_9_115440 Lactuca sativa HOM05D000533 ORTHO05D001069 3.4e-06 55.5 46 63.0
CsaV3_3G027330 Cucumis sativus L. HOM05D000533 ORTHO05D001069 5.8e-06 54.7 85 42.4


User provided reference genes

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