Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.5e-83 312.8 156 100.0
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.3e-63 246.5 124 99.2
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.6e-63 244.2 124 98.4
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 2.5e-62 242.3 124 96.8
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 1.3e-61 240.0 124 96.0
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 2.1e-61 239.2 124 94.4
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 8.1e-61 237.3 124 93.5
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 1.1e-60 236.9 124 92.7
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 1.1e-60 236.9 124 92.7
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 1.4e-60 236.5 124 93.5
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 4.0e-60 235.0 124 92.7
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 6.9e-60 234.2 124 91.9
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 9.0e-60 233.8 124 91.1
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 1.2e-59 233.4 124 91.9
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 1.2e-59 233.4 124 91.1
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 1.5e-59 233.0 124 92.7
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 2.0e-59 232.6 124 90.3
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 2.0e-59 232.6 124 90.3
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 2.0e-59 232.6 124 91.1
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 4.5e-59 231.5 124 91.1
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 4.5e-59 231.5 124 91.1
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 4.5e-59 231.5 124 90.3
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 4.5e-59 231.5 124 91.1
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 4.5e-59 231.5 124 90.3
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 4.5e-59 231.5 124 91.1
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 5.8e-59 231.1 124 90.3
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 5.8e-59 231.1 124 91.1
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 5.8e-59 231.1 124 91.1
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 5.8e-59 231.1 123 92.7
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 7.6e-59 230.7 124 90.3
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 1.3e-58 229.9 124 90.3
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 1.3e-58 229.9 124 91.1
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.3e-58 229.9 132 87.1
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.3e-58 229.9 124 91.1
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.3e-58 229.9 124 91.1
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 1.3e-58 229.9 124 88.7
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 1.3e-58 229.9 124 89.5
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 2.2e-58 229.2 124 89.5
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 2.2e-58 229.2 124 88.7
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 3.8e-58 228.4 124 87.9
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 4.9e-58 228.0 124 87.1
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 6.4e-58 227.6 123 88.6
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 6.4e-58 227.6 123 88.6
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 6.4e-58 227.6 124 87.9
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 6.4e-58 227.6 124 87.9
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 8.4e-58 227.3 124 90.3
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 8.4e-58 227.3 124 88.7
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 8.4e-58 227.3 124 87.9
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.1e-57 226.9 124 88.7
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 1.1e-57 226.9 124 87.9
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 1.1e-57 226.9 124 87.9
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 1.1e-57 226.9 124 88.7
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 1.1e-57 226.9 124 86.3
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 1.4e-57 226.5 133 83.5
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 1.4e-57 226.5 124 87.9
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.4e-57 226.5 124 87.1
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 2.4e-57 225.7 123 87.0
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 2.4e-57 225.7 123 87.8
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 2.4e-57 225.7 124 86.3
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 3.2e-57 225.3 124 87.1
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 4.2e-57 224.9 124 87.1
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 5.4e-57 224.6 124 86.3
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 5.4e-57 224.6 123 87.8
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 5.4e-57 224.6 123 86.2
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 5.4e-57 224.6 123 87.8
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 5.4e-57 224.6 123 87.8
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 7.1e-57 224.2 123 88.6
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 7.1e-57 224.2 123 88.6
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 7.1e-57 224.2 124 84.7
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 9.3e-57 223.8 123 86.2
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 9.3e-57 223.8 123 86.2
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 9.3e-57 223.8 123 87.0
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 9.3e-57 223.8 124 87.1
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.2e-56 223.4 124 87.1
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.2e-56 223.4 123 85.4
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 1.6e-56 223.0 123 87.8
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 1.6e-56 223.0 123 87.8
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 2.1e-56 222.6 123 85.4
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 2.1e-56 222.6 124 84.7
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 2.1e-56 222.6 126 83.3
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 2.1e-56 222.6 123 85.4
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 2.7e-56 222.2 123 85.4
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 3.5e-56 221.9 124 86.3
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 4.6e-56 221.5 123 86.2
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 7.9e-56 220.7 122 87.7
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 1.3e-55 219.9 124 84.7
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 2.3e-55 219.2 123 84.6
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 84.6
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 3.0e-55 218.8 123 85.4
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 1.1e-54 216.9 123 83.7
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 1.1e-54 216.9 123 83.7
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 1.1e-54 216.9 124 85.5
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.9e-54 216.1 127 81.9
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 1.9e-54 216.1 123 84.6
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 5.6e-54 214.5 123 82.1
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 7.4e-54 214.2 124 80.6
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 2.1e-53 212.6 128 77.3
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 8.1e-53 210.7 124 79.8
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 2.4e-52 209.1 124 78.2
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.5e-51 206.5 124 76.6
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 9.9e-51 203.8 133 73.7
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 9.9e-51 203.8 124 75.0
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 2.9e-50 202.2 111 86.5
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 1.1e-49 200.3 106 90.6
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 3.2e-49 198.7 118 80.5
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 4.6e-48 194.9 111 83.8
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 3.9e-47 191.8 173 58.4
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 5.1e-47 191.4 124 72.6
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 5.1e-47 191.4 122 71.3
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 6.7e-47 191.0 107 84.1
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.5e-46 189.1 124 71.8
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 1.7e-42 176.4 105 84.8
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 2.9e-42 175.6 122 66.4
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 2.7e-40 169.1 119 72.3
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 2.7e-40 169.1 110 76.4
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 3.5e-40 168.7 124 64.5
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.5e-40 168.7 104 76.0
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.0e-39 167.2 124 66.9
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 1.6e-37 159.8 122 55.7
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 4.8e-37 158.3 97 74.2
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 4.1e-36 155.2 82 92.7
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.0e-34 150.6 119 63.0
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 2.7e-32 142.5 125 56.0
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.7e-32 142.5 124 66.1
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.7e-32 142.5 124 66.1
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 4.1e-28 128.6 124 56.5
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.7e-26 123.2 67 91.0
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.0e-23 112.5 60 91.7
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.7e-23 111.3 128 55.5
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 8.8e-23 110.9 65 84.6
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 1.3e-21 107.1 58 87.9
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.7e-21 106.7 86 61.6
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 1.1e-20 104.0 60 81.7
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.4e-20 103.6 63 76.2
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.4e-20 102.8 63 76.2
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.5e-19 99.0 50 96.0
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 4.2e-17 92.0 46 93.5
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 1.5e-14 83.6 127 41.7
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 2.8e-13 79.3 127 35.4
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 4.1e-12 75.5 132 34.8
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 1.2e-11 73.9 116 34.5
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 6.5e-10 68.2 64 57.8


User provided reference genes

Program Settings