Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.3e-81 304.3 153 100.0
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.0e-79 297.7 153 98.0
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 2.5e-78 295.4 153 95.4
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.2e-78 294.7 148 99.3
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.1e-77 290.8 153 93.5
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.1e-75 286.6 153 92.2
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 2.2e-74 282.3 153 89.5
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.2e-74 282.3 153 92.2
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 2.8e-74 282.0 153 88.9
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 8.2e-74 280.4 153 88.9
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.1e-73 280.0 151 92.1
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 1.8e-73 279.3 153 89.5
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 2.4e-73 278.9 153 86.9
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 6.9e-73 277.3 153 88.2
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 6.9e-73 277.3 145 93.8
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.2e-72 276.6 151 87.4
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.5e-72 276.2 150 88.0
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.5e-72 276.2 153 87.6
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.0e-72 275.8 150 88.7
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.0e-72 275.8 151 87.4
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.0e-72 275.8 153 88.2
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 2.6e-72 275.4 153 86.3
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 1.0e-71 273.5 153 85.6
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.3e-71 273.1 151 87.4
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.7e-71 272.7 153 86.3
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 3.8e-71 271.6 153 85.0
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 3.8e-71 271.6 152 85.5
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 5.0e-71 271.2 153 86.3
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 6.5e-71 270.8 153 85.0
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 6.5e-71 270.8 153 85.6
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.5e-71 270.4 151 86.1
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 8.5e-71 270.4 153 86.9
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 8.5e-71 270.4 153 85.0
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 1.1e-70 270.0 153 84.3
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.9e-70 269.2 153 83.7
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 1.9e-70 269.2 153 84.3
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.9e-70 269.2 151 85.4
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.5e-70 268.9 150 85.3
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 2.5e-70 268.9 153 85.0
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 3.2e-70 268.5 151 84.8
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 3.2e-70 268.5 153 84.3
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 4.2e-70 268.1 153 86.9
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.2e-70 268.1 153 86.9
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 4.2e-70 268.1 153 86.3
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.5e-70 267.7 150 87.3
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 5.5e-70 267.7 150 85.3
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 5.5e-70 267.7 153 81.7
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 7.2e-70 267.3 153 81.0
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 9.4e-70 266.9 153 82.4
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 9.4e-70 266.9 150 84.7
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.2e-69 266.5 151 83.4
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.2e-69 266.5 151 86.1
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.2e-69 266.5 150 84.0
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 1.6e-69 266.2 150 84.7
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.6e-69 266.2 151 84.1
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.1e-69 265.8 153 85.0
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 2.1e-69 265.8 152 86.8
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.7e-69 265.4 150 86.0
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 3.6e-69 265.0 151 84.1
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.7e-69 264.6 155 83.9
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 4.7e-69 264.6 153 81.7
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 4.7e-69 264.6 153 86.3
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 4.7e-69 264.6 153 83.7
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 7.9e-69 263.8 153 85.0
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 7.9e-69 263.8 145 86.9
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.0e-68 263.5 151 84.1
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.0e-68 263.5 153 81.7
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.0e-68 263.5 150 87.3
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 85.0
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 1.8e-68 262.7 151 83.4
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 82.4
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 2.3e-68 262.3 151 81.5
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.0e-68 261.9 151 82.1
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 3.9e-68 261.5 153 83.0
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 3.9e-68 261.5 153 79.7
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 5.1e-68 261.2 152 84.9
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.7e-68 260.8 154 82.5
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 85.6
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 8.8e-68 260.4 153 83.0
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 79.1
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.1e-67 260.0 155 81.3
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.6e-67 258.8 153 82.4
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 2.6e-67 258.8 153 79.7
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.3e-67 258.5 152 80.3
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 4.4e-67 258.1 151 84.8
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 9.7e-67 256.9 151 81.5
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 9.7e-67 256.9 151 84.1
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 79.7
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 1.7e-66 256.1 151 80.8
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 82.4
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.7e-66 255.0 150 85.3
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 6.3e-66 254.2 148 88.5
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.1e-65 253.4 151 81.5
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 77.1
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 3.1e-65 251.9 153 77.1
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.6e-64 249.6 149 81.2
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 1.0e-63 246.9 153 73.2
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.0e-63 246.9 148 78.4
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.7e-63 246.1 153 74.5
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 5.0e-63 244.6 150 78.0
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 77.1
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 8.5e-63 243.8 150 74.0
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 73.9
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 73.9
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 1.5e-62 243.0 151 80.1
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 2.5e-62 242.3 150 74.7
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 3.2e-62 241.9 153 74.5
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 3.2e-62 241.9 150 74.0
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 3.2e-62 241.9 150 73.3
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 9.4e-62 240.4 152 71.7
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 71.2
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 2.1e-61 239.2 151 72.2
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 2.1e-61 239.2 150 74.0
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 2.7e-61 238.8 150 72.7
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.0e-60 236.9 151 72.2
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.4e-60 236.5 153 71.9
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.3e-59 231.9 153 71.9
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 7.5e-59 230.7 155 73.5
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 9.7e-59 230.3 150 76.7
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 1.3e-58 229.9 168 65.5
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.7e-58 229.6 151 71.5
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.2e-58 229.2 155 72.3
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.4e-57 225.7 143 79.0
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 4.2e-54 214.9 153 66.7
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.1e-53 212.6 119 87.4
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 6.1e-53 211.1 126 83.3
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.0e-53 210.7 153 71.2
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 8.0e-53 210.7 153 62.1
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 5.2e-52 208.0 119 82.4
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 4.4e-51 204.9 145 61.4
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 2.0e-48 196.1 128 71.1
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.0e-47 193.7 111 79.3
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 8.5e-47 190.7 111 77.5
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.4e-44 183.3 153 55.6
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.1e-41 173.7 181 55.2
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.0e-36 157.1 95 82.1
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 9.8e-35 150.6 75 92.0
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.7e-34 149.8 149 47.7
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.2e-34 149.4 78 93.6
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.0e-33 144.4 100 75.0
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-31 140.2 121 61.2
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 2.5e-30 136.0 75 81.3
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.0e-28 130.6 144 45.1
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.2e-28 128.3 67 88.1
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 8.9e-28 127.5 75 84.0
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 8.9e-28 127.5 75 80.0
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.8e-27 124.8 65 87.7
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.3e-26 123.6 75 82.7
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 1.2e-24 117.1 78 76.9
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.6e-24 116.7 89 69.7
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.6e-21 105.5 149 38.9
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.8e-12 76.6 48 81.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.6e-08 63.5 43 69.8


User provided reference genes

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