Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.0e-284 982.6 471 100.0
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 9.0e-281 969.5 471 98.3
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 8.5e-279 963.0 470 97.7
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 4.7e-253 877.5 471 89.4
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 7.5e-251 870.2 474 87.6
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 4.1e-249 864.4 471 87.3
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.6e-243 845.1 450 88.0
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.7e-242 842.4 450 87.8
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 9.5e-214 746.9 468 76.5
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.4e-212 743.0 457 76.1
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 5.2e-212 741.1 457 75.3
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.2e-211 740.0 457 75.9
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 2.6e-211 738.8 457 75.1
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.2e-210 735.7 472 74.2
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 3.7e-210 734.9 471 74.3
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 8.3e-210 733.8 471 74.1
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.1e-209 733.4 457 74.4
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 3.2e-209 731.9 463 76.0
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 4.1e-209 731.5 471 74.1
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 4.1e-209 731.5 471 73.9
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 9.2e-209 730.3 468 73.1
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 1.2e-208 729.9 468 73.5
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.2e-208 729.9 451 76.9
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.7e-208 728.8 466 75.8
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.7e-207 726.1 472 73.7
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 4.3e-206 721.5 468 73.5
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 9.5e-206 720.3 450 75.3
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.2e-205 719.9 463 74.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.6e-205 719.5 467 73.0
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 3.6e-205 718.4 463 74.9
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 6.2e-205 717.6 457 75.5
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.4e-204 716.5 466 74.7
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 4.0e-204 714.9 467 74.3
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 4.9e-202 708.0 461 73.3
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.9e-202 708.0 460 74.6
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 8.4e-202 707.2 401 81.3
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.1e-201 706.8 476 72.7
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 2.4e-201 705.7 452 75.4
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 5.4e-201 704.5 446 73.1
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 7.1e-201 704.1 460 74.1
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 9.2e-201 703.7 475 72.4
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.7e-200 702.2 462 74.2
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.0e-199 700.3 451 74.5
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.3e-199 699.9 452 73.5
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.3e-199 699.1 468 72.2
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 6.6e-199 697.6 477 71.5
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 1.9e-198 696.0 449 74.2
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 5.6e-198 694.5 410 79.8
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 9.6e-198 693.7 470 72.1
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.8e-197 692.2 479 71.2
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 2.8e-197 692.2 457 72.4
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 3.6e-197 691.8 462 72.7
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 4.7e-197 691.4 451 72.9
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.4e-196 689.9 456 72.8
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.8e-196 689.5 451 73.4
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.4e-196 689.1 451 73.8
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.4e-196 689.1 453 74.6
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.1e-196 688.7 447 75.2
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 5.2e-196 688.0 452 73.7
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 6.9e-196 687.6 458 72.1
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.2e-195 686.8 453 72.4
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.5e-195 686.4 451 72.3
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 2.6e-195 685.6 473 69.8
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 2.6e-195 685.6 467 71.5
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.6e-195 685.6 473 70.2
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.6e-195 685.6 424 76.9
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.4e-195 685.3 453 72.0
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 7.6e-195 684.1 479 69.5
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 9.9e-195 683.7 416 78.4
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.2e-194 682.6 431 74.2
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.9e-194 682.2 400 80.0
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 3.8e-194 681.8 364 83.8
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.9e-194 681.4 449 72.6
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 6.4e-194 681.0 453 71.7
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 8.4e-194 680.6 431 74.2
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 8.4e-194 680.6 461 70.9
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 8.4e-194 680.6 449 72.8
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.1e-193 680.2 449 72.4
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.9e-193 679.5 364 83.5
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 2.4e-193 679.1 415 76.4
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.2e-193 678.7 458 71.6
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 4.2e-193 678.3 449 72.2
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.4e-193 677.9 447 73.4
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 2.7e-192 675.6 407 76.4
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 4.6e-192 674.9 418 76.1
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 6.0e-192 674.5 458 71.0
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.3e-191 673.3 407 77.9
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 2.3e-191 672.5 446 73.3
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.3e-191 672.5 451 71.4
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 3.0e-191 672.2 452 71.9
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 3.9e-191 671.8 408 77.0
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 3.9e-191 671.8 460 70.7
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 6.6e-191 671.0 431 74.0
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 1.1e-190 670.2 426 73.5
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.1e-190 670.2 407 77.9
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.5e-190 669.8 506 66.8
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 4.3e-190 668.3 451 71.0
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 4.8e-189 664.8 405 77.0
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.4e-188 663.3 452 71.7
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.2e-187 660.2 422 75.4
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.5e-187 659.8 406 76.6
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.0e-187 659.4 459 70.8
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 7.6e-187 657.5 412 75.2
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 1.1e-185 653.7 449 71.9
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 2.4e-185 652.5 519 63.4
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.6e-184 649.8 440 71.4
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 3.3e-182 642.1 384 76.6
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 2.1e-181 639.4 444 69.8
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.4e-180 636.7 451 70.1
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 3.1e-180 635.6 445 70.8
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.5e-179 633.3 426 70.2
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 4.9e-178 628.2 413 71.9
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 5.6e-174 614.8 447 66.0
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 6.2e-173 611.3 322 86.0
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 4.0e-172 608.6 402 73.9
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.3e-170 603.6 326 83.4
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.2e-170 602.8 378 73.5
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 6.5e-170 601.3 346 79.8
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 9.3e-169 597.4 451 65.9
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 4.8e-165 585.1 410 68.8
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.3e-158 562.4 375 67.2
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 9.7e-158 560.8 406 67.5
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.8e-157 559.3 291 86.3
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.7e-157 558.9 309 85.1
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 6.3e-157 558.1 289 86.2
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 1.3e-154 550.4 289 85.5
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 5.0e-154 548.5 270 93.7
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 8.5e-146 521.2 316 77.2
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 8.5e-146 521.2 290 80.0
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.3e-142 509.2 334 66.8
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 8.0e-136 488.0 408 64.0
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.5e-126 457.2 317 72.2
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 2.9e-122 443.0 273 77.7
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 4.2e-121 439.1 377 53.1
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 7.5e-118 428.3 285 67.0
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.9e-111 404.8 342 53.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.6e-96 356.3 213 78.9
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 7.5e-94 348.6 318 52.5
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.5e-89 333.6 332 47.9
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 5.1e-66 256.1 139 83.5
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.9e-65 254.2 179 67.0
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.6e-54 217.2 109 87.2
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 5.1e-50 203.0 122 73.8
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 6.3e-48 196.1 124 71.8
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 2.0e-46 191.0 126 69.8
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.6e-46 190.7 137 62.0
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.3e-33 147.1 85 77.6
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.7e-33 145.6 85 76.5
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 6.5e-29 132.9 80 75.0
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 8.0e-27 125.9 101 61.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.8e-13 80.5 51 70.6
SHI25903 Sapria himalayana HOM05D004680 ORTHO05D365905 4.4e-09 67.0 134 40.3
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 3.1e-07 60.8 88 43.2
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 7.7e-06 56.2 131 35.1


User provided reference genes

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