Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 0.0e+00 1197.6 697 100.0
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 0.0e+00 1174.8 697 96.1
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 0.0e+00 1120.1 699 90.8
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 3.1e-168 596.3 793 55.9
Thecc.06G101100 Theobroma cacao HOM05D008208 ORTHO05D010143 6.5e-118 429.1 786 47.5
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 7.0e-88 329.3 719 41.7
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 5.3e-43 180.3 783 32.7
Ciclev10025127m.g Citrus clementina HOM05D008208 ORTHO05D010143 1.0e-38 166.0 747 32.1
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 6.9e-35 153.3 736 29.5
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 2.6e-34 151.4 746 30.4
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.3e-33 149.1 769 31.9
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 4.9e-33 147.1 770 31.8
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 3.5e-31 141.0 276 40.6
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 1.5e-29 135.6 771 31.0
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 2.1e-28 131.7 763 31.8
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 2.1e-28 131.7 807 30.2
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 3.4e-26 124.4 768 28.5
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 5.8e-26 123.6 712 29.6
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 2.9e-25 121.3 754 29.0
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 3.8e-25 120.9 854 26.9
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 8.4e-25 119.8 742 26.8
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 9.3e-24 116.3 293 35.2
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 2.7e-23 114.8 860 27.2
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.3e-22 112.5 750 28.4
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.3e-21 107.8 734 27.4
CiPaw.02G145300 Carya illinoinensis HOM05D008208 ORTHO05D010143 2.2e-20 105.1 778 28.3
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 8.2e-20 103.2 387 32.8
Potri.001G190601 Populus trichocarpa HOM05D008208 ORTHO05D010143 1.4e-19 102.4 642 29.1
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.8e-19 102.1 367 32.2
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 2.0e-18 98.6 738 28.0
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 2.6e-18 98.2 205 39.0
Sabra01G0150900 Salix brachista HOM05D008208 ORTHO05D010143 1.0e-17 96.3 627 28.4
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.3e-17 95.9 891 26.2
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 1.0e-14 86.3 721 25.8
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 1.8e-14 85.5 415 31.8
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 3.0e-14 84.7 763 27.4
SGA_v2.0_scaffold265G46060 Striga asiatica HOM05D008208 ORTHO05D010143 2.0e-13 82.0 280 35.0
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 7.4e-13 80.1 390 29.5
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.3e-12 79.3 184 37.0
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 4.8e-12 77.4 743 26.8
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 4.8e-12 77.4 274 36.9
ClCG07G013360 Citrullus lanatus HOM05D026900 ORTHO05D010143 1.1e-11 76.3 751 26.0
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.4e-11 75.9 196 37.8
DCAR_023083 Daucus carota HOM05D008208 ORTHO05D010143 3.1e-11 74.7 336 33.9
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 3.1e-11 74.7 232 36.2
Eucgr.F03082 Eucalyptus grandis HOM05D008208 ORTHO05D010143 5.3e-11 73.9 725 27.9
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 2.0e-10 72.0 708 27.3
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 2.6e-10 71.6 392 30.6
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 4.5e-10 70.9 215 32.6
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.0e-09 69.7 219 32.4
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.0e-09 69.7 753 23.2
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 1.0e-09 69.7 404 27.7
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 1.3e-09 69.3 720 24.6
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 2.2e-09 68.6 219 32.4
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.5e-09 67.0 219 32.0
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.1e-08 66.2 218 32.6
CDE02G2770 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 1.4e-08 65.9 174 34.5
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 1.4e-08 65.9 368 29.3
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.4e-08 65.9 201 34.3
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.5e-08 65.1 246 30.1
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.2e-08 64.7 218 32.1
Sed0025504 Sechium edule HOM05D026900 ORTHO05D010143 3.2e-08 64.7 695 25.5
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 4.2e-08 64.3 230 27.8
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 7.2e-08 63.5 217 32.3
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 1.2e-07 62.8 194 32.5
EL10Ac9g21199 Beta vulgaris HOM05D008208 ORTHO05D010143 1.2e-07 62.8 426 25.1
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 1.6e-07 62.4 202 33.7
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.6e-07 62.4 232 31.0
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.6e-07 62.4 232 31.0
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.6e-07 62.4 239 29.7
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.1e-07 62.0 238 32.8
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 2.1e-07 62.0 242 28.9
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 2.7e-07 61.6 231 32.0
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.7e-07 61.6 385 26.2
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.7e-07 61.6 385 26.2
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 3.6e-07 61.2 246 32.1
MELO3C013005.2 Cucumis melo HOM05D026900 ORTHO05D010143 6.1e-07 60.5 638 26.3
HanXRQChr09g0275691 Helianthus annuus HOM05D008208 ORTHO05D010143 6.1e-07 60.5 438 26.5
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 7.9e-07 60.1 189 33.3
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 1.0e-06 59.7 721 26.2
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.4e-06 59.3 229 29.7
CDE05G0720 Ceratophyllum demersum HOM05D008208 ORTHO05D010143 1.8e-06 58.9 138 35.5
CsaV3_3G023500 Cucumis sativus L. HOM05D026900 ORTHO05D010143 1.8e-06 58.9 262 30.2
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.8e-06 58.9 782 26.0
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 1.8e-06 58.9 238 29.0
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.8e-06 58.9 248 29.0
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 2.3e-06 58.5 262 29.0
SalBow2G3317 Salvia bowleyana HOM05D008208 ORTHO05D010143 2.3e-06 58.5 296 31.1
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.9e-06 57.8 225 29.8
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 3.9e-06 57.8 222 31.1
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 3.9e-06 57.8 205 30.7
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 3.9e-06 57.8 221 29.9
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 3.9e-06 57.8 187 33.2
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.1e-06 57.4 233 30.0
Lsat_1_v5_gn_5_134320 Lactuca sativa HOM05D008208 ORTHO05D010143 6.7e-06 57.0 389 27.0
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 6.7e-06 57.0 219 30.6
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 8.8e-06 56.6 222 31.5
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 8.8e-06 56.6 747 26.5


User provided reference genes

Program Settings