Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 0.0e+00 1243.0 637 100.0
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 0.0e+00 1152.5 637 93.4
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 1.3e-298 1029.2 637 83.7
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 6.9e-292 1006.9 640 81.6
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 3.7e-245 851.7 634 72.1
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 4.3e-209 731.9 622 63.8
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.1e-208 729.6 648 61.6
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 6.8e-207 724.5 644 61.5
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 1.2e-206 723.8 652 62.0
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.4e-204 716.8 658 60.8
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 3.2e-204 715.7 697 57.0
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 2.1e-203 713.0 490 72.9
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 2.7e-203 712.6 694 58.2
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.3e-202 710.3 645 60.2
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 5.6e-201 704.9 506 70.8
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 7.3e-201 704.5 650 59.7
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.1e-200 703.0 573 65.3
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 3.6e-200 702.2 636 60.8
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 8.1e-200 701.0 655 59.5
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 1.1e-199 700.7 649 59.9
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 9.9e-198 694.1 638 60.7
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 1.7e-197 693.3 696 55.7
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 1.7e-197 693.3 661 57.5
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 2.9e-197 692.6 555 64.7
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 3.8e-197 692.2 521 68.3
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 6.4e-197 691.4 555 64.5
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 8.4e-197 691.0 524 67.9
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 1.9e-196 689.9 555 64.3
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 7.1e-196 688.0 397 93.5
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 4.6e-195 685.3 661 56.7
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 4.6e-195 685.3 661 56.7
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 2.3e-194 682.9 653 58.3
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 5.1e-194 681.8 653 58.3
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 5.6e-193 678.3 495 68.9
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 1.1e-191 674.1 603 59.9
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 1.8e-191 673.3 680 57.1
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 3.1e-191 672.5 552 63.9
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 5.3e-191 671.8 535 64.9
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 6.9e-191 671.4 601 59.9
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 2.6e-190 669.5 535 64.7
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 4.5e-190 668.7 488 71.3
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 4.5e-190 668.7 600 60.0
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 5.8e-190 668.3 528 65.2
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.2e-189 666.4 546 63.4
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 8.4e-189 664.5 508 66.7
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 1.4e-188 663.7 534 64.4
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.4e-188 663.7 486 71.2
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 1.9e-188 663.3 534 64.4
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 1.9e-188 663.3 515 65.8
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 3.2e-188 662.5 531 64.4
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 4.2e-188 662.1 511 66.3
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 3.5e-187 659.1 481 68.8
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 7.9e-187 657.9 515 66.8
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.3e-186 657.1 492 68.1
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 2.3e-186 656.4 484 68.8
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 2.1e-184 649.8 646 57.1
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 4.8e-184 648.7 484 68.0
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 6.2e-184 648.3 495 67.7
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 6.9e-183 644.8 748 51.5
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 6.9e-183 644.8 717 54.4
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 3.4e-182 642.5 532 61.5
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 5.8e-182 641.7 532 63.7
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 5.8e-182 641.7 721 53.0
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.3e-181 640.6 485 68.0
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 2.2e-181 639.8 517 63.6
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 4.9e-181 638.6 485 67.6
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 3.2e-180 636.0 656 56.9
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 2.7e-179 632.9 655 54.5
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 4.6e-179 632.1 648 54.3
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.8e-178 630.2 528 62.5
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 2.3e-178 629.8 492 66.5
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 7.4e-177 624.8 485 66.2
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 9.6e-177 624.4 569 61.7
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 1.3e-176 624.0 486 66.0
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 3.7e-176 622.5 539 60.5
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 1.2e-174 617.5 466 68.2
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 2.0e-174 616.7 495 65.7
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 1.7e-173 613.6 611 58.9
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.4e-172 610.5 487 64.5
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 9.3e-172 607.8 584 56.5
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 2.1e-171 606.7 497 61.8
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 3.5e-171 605.9 624 56.7
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 2.2e-168 596.7 558 57.5
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.4e-167 594.0 665 50.8
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 9.0e-167 591.3 513 59.8
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.3e-165 587.4 496 60.3
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 3.8e-165 585.9 545 59.3
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 8.5e-165 584.7 643 54.3
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.4e-164 583.9 640 51.4
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.9e-164 583.6 492 62.6
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 1.4e-162 577.4 544 57.5
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.4e-159 567.4 645 52.7
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 5.9e-158 562.0 620 52.3
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 4.7e-155 552.4 392 73.0
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 1.0e-154 551.2 465 63.2
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.1e-143 514.6 492 56.5
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.3e-141 507.7 383 66.8
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 6.5e-141 505.4 499 57.9
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 3.6e-139 499.6 525 52.8
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 5.7e-137 492.3 413 65.4
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 7.0e-135 485.3 623 45.9
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 5.9e-134 482.3 526 50.0
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 1.0e-130 471.5 492 55.1
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 8.8e-130 468.4 309 77.7
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 8.3e-128 461.8 293 80.2
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 1.1e-127 461.5 523 50.7
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.3e-117 427.9 478 47.9
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 5.0e-117 426.0 392 56.9
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 1.6e-107 394.4 554 43.3
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 9.8e-105 385.2 351 58.1
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.4e-103 381.3 468 47.4
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 7.3e-100 369.0 368 53.0
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 9.2e-95 352.1 285 67.4
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.7e-93 347.8 457 43.5
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.2e-91 341.7 266 68.0
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.2e-91 341.7 407 47.9
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 3.4e-89 333.6 413 46.7
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 5.1e-85 319.7 326 58.3
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.3e-83 315.1 550 38.0
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 1.4e-82 311.6 372 47.6
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 1.4e-82 311.6 372 47.6
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.6e-81 307.4 375 48.0
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 3.4e-81 307.0 263 60.5
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 3.5e-78 297.0 262 61.1
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 3.0e-77 293.9 195 76.4
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 2.1e-70 271.2 192 73.4
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 3.0e-69 267.3 191 70.7
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 3.2e-63 247.3 502 35.7
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 4.2e-63 246.9 178 70.8
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 2.3e-61 241.1 346 43.4
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 2.1e-59 234.6 155 79.4
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 1.2e-57 228.8 500 32.6
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 2.5e-55 221.1 241 53.1
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 9.7e-52 209.1 265 43.8
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.0e-49 201.4 243 46.5
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.0e-48 199.1 244 45.9
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 2.5e-47 194.5 156 69.2
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 3.7e-43 180.6 147 66.7
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 2.6e-41 174.5 108 77.8
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 6.5e-40 169.9 166 56.0
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 2.8e-35 154.5 149 61.1
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 7.0e-34 149.8 233 39.5
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 2.6e-33 147.9 168 47.0
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.5e-33 147.1 241 37.8
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 4.4e-28 130.6 125 50.4
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 9.7e-28 129.4 179 39.7
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 3.1e-26 124.4 264 33.7
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 5.9e-25 120.2 73 79.5
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 1.6e-22 112.1 103 55.3
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 1.8e-21 108.6 253 33.6
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 2.0e-17 95.1 52 94.2
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 5.0e-16 90.5 60 73.3
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 8.5e-16 89.7 141 40.4
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-14 84.3 152 34.2
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 1.4e-13 82.4 102 46.1
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.8e-13 82.0 65 55.4
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.2e-12 79.3 87 49.4
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 1.5e-12 79.0 74 54.1
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 1.5e-12 79.0 53 67.9
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.2e-11 75.1 69 49.3
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 3.7e-11 74.3 41 68.3
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 4.9e-11 73.9 41 68.3
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 8.3e-11 73.2 48 68.8
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 2.0e-09 68.6 55 63.6
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 1.0e-08 66.2 48 75.0
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-08 66.2 81 46.9
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 1.3e-08 65.9 58 53.4
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 4.3e-07 60.8 52 59.6
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 5.6e-07 60.5 87 35.6
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 6.1e-06 57.0 51 52.9


User provided reference genes

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