Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 5.9e-35 150.6 92 100.0
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 5.0e-34 147.5 92 98.9
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.0e-31 138.3 92 94.6
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 2.5e-25 118.6 90 86.7
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.6e-24 114.8 90 83.3
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 6.8e-23 110.5 90 78.9
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.8e-20 102.4 91 78.0
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.1e-20 101.7 89 77.5
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 7.0e-20 100.5 89 75.3
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 5.9e-19 97.4 90 75.6
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.7e-18 95.9 84 79.8
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 5.0e-18 94.4 89 71.9
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 5.0e-18 94.4 90 71.1
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 8.5e-18 93.6 88 72.7
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.1e-17 93.2 89 75.3
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 3.2e-17 91.7 88 73.9
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 4.2e-17 91.3 86 74.4
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 4.2e-17 91.3 88 71.6
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 9.5e-17 90.1 82 75.6
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 9.5e-17 90.1 83 73.5
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 1.6e-16 89.4 88 72.7
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.6e-16 89.4 75 81.3
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.1e-16 89.0 78 80.8
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.8e-16 88.6 88 71.6
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 4.7e-16 87.8 89 69.7
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 6.1e-16 87.4 88 72.7
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 8.0e-16 87.0 91 50.5
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.4e-15 86.3 89 73.0
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 1.4e-15 86.3 79 78.5
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.8e-15 85.9 86 70.9
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.8e-15 85.9 89 69.7
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 3.0e-15 85.1 78 75.6
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 3.0e-15 85.1 87 69.0
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 4.0e-15 84.7 88 69.3
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 4.0e-15 84.7 86 72.1
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 8.8e-15 83.6 89 69.7
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 8.8e-15 83.6 79 77.2
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.5e-14 82.8 87 67.8
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 1.5e-14 82.8 89 67.4
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.0e-14 82.4 89 67.4
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 2.6e-14 82.0 88 67.0
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 2.6e-14 82.0 89 66.3
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 5.7e-14 80.9 89 67.4
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 7.5e-14 80.5 89 68.5
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 7.5e-14 80.5 97 67.0
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 1.3e-13 79.7 85 71.8
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.3e-13 79.7 89 69.7
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-13 79.7 89 66.3
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-13 79.7 53 71.7
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.7e-13 79.3 89 65.2
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.2e-13 79.0 82 68.3
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.2e-13 79.0 82 68.3
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 2.2e-13 79.0 88 65.9
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.8e-13 78.6 81 66.7
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.8e-13 78.6 89 66.3
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.7e-13 78.2 89 68.5
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 4.9e-13 77.8 89 65.2
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.3e-13 77.4 89 64.0
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 6.3e-13 77.4 90 66.7
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 6.3e-13 77.4 81 72.8
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 8.3e-13 77.0 76 72.4
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 8.3e-13 77.0 90 50.0
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 8.3e-13 77.0 82 67.1
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 1.1e-12 76.6 82 67.1
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 1.4e-12 76.3 84 64.3
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 1.8e-12 75.9 48 75.0
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 1.8e-12 75.9 75 69.3
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 2.4e-12 75.5 89 65.2
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.4e-12 75.5 89 65.2
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.4e-12 75.5 90 68.9
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 2.4e-12 75.5 88 67.0
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 5.4e-12 74.3 77 71.4
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 5.4e-12 74.3 88 62.5
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 5.4e-12 74.3 89 66.3
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 7.0e-12 73.9 88 46.6
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 7.0e-12 73.9 92 63.0
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 7.0e-12 73.9 88 67.0
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 7.0e-12 73.9 47 70.2
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 9.2e-12 73.6 88 64.8
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 9.2e-12 73.6 88 65.9
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.2e-11 73.2 76 51.3
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.2e-11 73.2 95 64.2
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.2e-11 73.2 88 63.6
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.2e-11 73.2 88 45.5
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 2.0e-11 72.4 91 63.7
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.0e-11 72.4 88 64.8
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 2.7e-11 72.0 80 63.8
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.7e-11 72.0 76 69.7
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 3.5e-11 71.6 87 66.7
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 3.5e-11 71.6 85 68.2
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 5.9e-11 70.9 77 70.1
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 7.8e-11 70.5 81 49.4
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 7.8e-11 70.5 88 62.5
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.0e-10 70.1 78 67.9
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.0e-10 70.1 89 67.4
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.9e-10 68.6 78 64.1
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 2.9e-10 68.6 77 58.4
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 2.9e-10 68.6 77 67.5
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 2.9e-10 68.6 77 58.4
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.9e-10 68.6 77 63.6
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 3.8e-10 68.2 87 62.1
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 5.0e-10 67.8 74 71.6
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 8.6e-10 67.0 76 71.1
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.5e-09 66.2 87 57.5
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.5e-09 66.2 74 67.6
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.9e-09 65.9 75 45.3
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 1.9e-09 65.9 86 39.5
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 2.5e-09 65.5 55 63.6
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 2.5e-09 65.5 83 68.7
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.5e-09 65.5 73 43.8
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.5e-09 65.5 77 64.9
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.3e-09 65.1 61 59.0
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 4.3e-09 64.7 75 40.0
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 4.3e-09 64.7 93 62.4
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.3e-09 64.7 73 68.5
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 4.3e-09 64.7 81 65.4
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 5.6e-09 64.3 77 62.3
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 7.3e-09 63.9 75 46.7
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 7.3e-09 63.9 53 52.8
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 9.5e-09 63.5 88 42.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 1.2e-08 63.2 76 44.7
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.6e-08 62.8 73 63.0
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.1e-08 62.4 91 57.1
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.6e-08 61.6 63 49.2
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 3.6e-08 61.6 86 41.9
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 6.1e-08 60.8 74 45.9
AUR62001519 Chenopodium quinoa HOM05D003238 ORTHO05D003571 6.1e-08 60.8 81 66.7
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 1.0e-07 60.1 91 40.7
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.0e-07 60.1 39 71.8
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.0e-07 60.1 121 37.2
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 1.8e-07 59.3 92 40.2
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 2.3e-07 58.9 87 60.9
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.0e-07 58.5 79 64.6
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 4.0e-07 58.2 118 33.1
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 4.0e-07 58.2 118 46.6
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 4.0e-07 58.2 91 40.7
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 5.2e-07 57.8 117 42.7
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 6.8e-07 57.4 51 51.0
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 8.9e-07 57.0 58 53.4
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 8.9e-07 57.0 57 47.4
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 8.9e-07 57.0 59 54.2
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.2e-06 56.6 113 34.5
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.2e-06 56.6 114 44.7
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 1.2e-06 56.6 79 59.5
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.2e-06 56.6 87 59.8
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 1.5e-06 56.2 120 35.0
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 2.0e-06 55.8 48 64.6
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.0e-06 55.8 122 32.8
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 4.4e-06 54.7 121 33.1
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 5.7e-06 54.3 47 53.2
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 7.5e-06 53.9 123 32.5
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 7.5e-06 53.9 123 32.5
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 7.5e-06 53.9 76 40.8
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 9.8e-06 53.5 74 41.9


User provided reference genes

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