Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 7.1e-136 487.3 247 100.0
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 7.1e-136 487.3 247 100.0
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.6e-135 486.1 247 99.6
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.1e-135 485.7 247 99.2
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.1e-135 485.7 247 99.2
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 5.7e-133 477.6 247 98.0
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 3.1e-131 471.9 245 96.7
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 9.0e-131 470.3 245 96.7
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 5.8e-130 467.6 245 96.3
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 2.9e-129 465.3 247 94.7
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 6.5e-129 464.2 247 95.1
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 2.5e-128 462.2 247 93.5
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 3.2e-128 461.8 246 93.9
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 5.5e-128 461.1 247 93.5
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 7.9e-127 457.2 245 92.7
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 7.9e-127 457.2 245 92.7
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.8e-126 456.1 247 93.9
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 1.8e-126 456.1 248 93.5
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 2.3e-126 455.7 247 93.5
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 2.3e-126 455.7 244 93.4
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 6.7e-126 454.1 247 92.3
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 6.7e-126 454.1 245 92.2
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 8.7e-126 453.8 247 91.9
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 8.7e-126 453.8 245 92.7
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 2.5e-125 452.2 245 93.5
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 2.5e-125 452.2 245 92.2
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 3.3e-125 451.8 245 91.8
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 3.3e-125 451.8 247 91.1
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 3.3e-125 451.8 247 90.7
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 3.3e-125 451.8 244 92.2
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 4.3e-125 451.4 247 92.3
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 4.3e-125 451.4 247 91.5
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 4.3e-125 451.4 247 91.9
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 5.7e-125 451.1 245 91.4
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 5.7e-125 451.1 250 90.8
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 9.7e-125 450.3 245 91.0
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 9.7e-125 450.3 244 91.8
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 91.5
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 1.6e-124 449.5 245 92.7
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 2.2e-124 449.1 247 90.3
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.2e-124 449.1 243 92.2
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.2e-124 449.1 247 91.5
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 90.3
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 91.1
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 91.1
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 3.7e-124 448.4 243 91.8
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 3.7e-124 448.4 247 90.7
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 4.8e-124 448.0 247 90.3
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 4.8e-124 448.0 247 90.7
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 4.8e-124 448.0 247 90.7
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 6.3e-124 447.6 245 91.0
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 89.9
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 91.1
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 90.3
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 89.9
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 90.3
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 89.9
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 89.9
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 90.3
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 90.7
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 2.4e-123 445.7 247 90.3
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 89.9
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 89.9
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 91.1
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 89.9
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 3.1e-123 445.3 245 91.0
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 4.1e-123 444.9 244 91.0
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 4.1e-123 444.9 247 89.9
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 5.3e-123 444.5 247 89.9
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 5.3e-123 444.5 246 90.7
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 89.5
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 90.7
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 90.3
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 89.9
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 1.2e-122 443.4 246 89.8
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.5
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.5
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 2.0e-122 442.6 245 90.2
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.1
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 2.6e-122 442.2 247 89.5
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.6e-122 442.2 247 89.9
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 89.1
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 88.7
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 88.3
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 89.1
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 7.7e-122 440.7 245 90.6
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 1.0e-121 440.3 248 89.5
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.7e-121 439.5 248 90.3
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 2.2e-121 439.1 246 91.1
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 2.2e-121 439.1 246 91.1
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.2e-121 439.1 248 89.5
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.2e-121 439.1 247 89.1
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 2.2e-121 439.1 270 84.4
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.1
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.1
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.1
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.1
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 3.8e-121 438.3 245 90.6
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 88.3
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 6.5e-121 437.6 246 88.2
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 88.7
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 8.5e-121 437.2 247 88.3
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 1.1e-120 436.8 245 88.6
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.1e-120 436.8 248 88.3
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 1.1e-120 436.8 248 88.3
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 1.1e-120 436.8 248 88.3
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-120 436.4 247 88.7
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 1.4e-120 436.4 245 88.6
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 1.4e-120 436.4 246 89.0
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 2.5e-120 435.6 248 88.3
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.5e-120 435.6 247 88.3
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 2.5e-120 435.6 248 88.3
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 3.2e-120 435.3 247 88.3
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.6e-119 433.0 234 92.3
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.7e-119 432.2 247 88.3
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 4.6e-119 431.4 247 87.0
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 2.3e-118 429.1 248 86.7
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 5.1e-118 427.9 248 88.7
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 5.1e-118 427.9 248 87.5
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 1.7e-116 422.9 286 78.7
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 1.4e-115 419.9 261 83.1
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 3.4e-114 415.2 248 85.5
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 5.9e-114 414.5 290 76.2
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 1.0e-113 413.7 248 85.1
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 5.0e-113 411.4 247 85.4
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 7.9e-111 404.1 249 82.3
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 1.0e-110 403.7 334 66.2
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 1.8e-110 402.9 251 80.5
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 2.6e-109 399.1 380 59.7
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 7.4e-109 397.5 249 79.9
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 1.4e-107 393.3 245 80.0
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.4e-107 393.3 266 78.2
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 3.1e-107 392.1 223 88.3
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 2.0e-106 389.4 253 76.7
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 3.5e-106 388.7 251 77.3
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.0e-105 387.1 211 91.5
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.0e-105 387.1 211 91.5
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.5e-104 382.5 251 75.3
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 2.7e-103 379.0 213 89.7
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 3.3e-101 372.1 360 59.2
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.0e-94 350.5 247 77.3
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 1.0e-94 350.5 245 75.1
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 5.0e-89 331.6 198 87.9
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 5.2e-86 321.6 245 70.6
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 1.4e-83 313.5 179 88.8
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 7.7e-82 307.8 172 90.7
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 1.7e-81 306.6 172 90.7
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 2.3e-81 306.2 165 91.5
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 6.6e-81 304.7 168 89.9
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.0e-73 280.8 280 57.1
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 1.7e-60 236.9 242 49.2
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 3.0e-57 226.1 138 81.9
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 4.9e-52 208.8 247 53.0
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 1.5e-48 197.2 232 44.4
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 3.6e-47 192.6 250 44.8
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 1.5e-45 187.2 102 89.2
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.7e-41 173.7 97 87.6
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 7.3e-40 168.3 208 52.9
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 2.6e-37 159.8 165 56.4
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 7.9e-34 148.3 139 60.4
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 4.5e-29 132.5 82 80.5
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 1.3e-28 131.0 83 78.3
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 2.7e-26 123.2 82 78.0
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 6.0e-26 122.1 83 74.7
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 6.7e-25 118.6 212 42.0
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 4.3e-24 115.9 232 35.3
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 2.5e-19 100.1 100 48.0
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.3e-17 94.4 53 92.5
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 5.7e-16 89.0 47 87.2
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 9.6e-16 88.2 51 88.2
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 4.8e-15 85.9 51 80.4
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 4.8e-15 85.9 52 90.4
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 9.0e-14 81.6 74 60.8
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 1.5e-13 80.9 79 59.5
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 9.3e-11 71.6 38 86.8
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 2.3e-09 67.0 90 51.1
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 3.0e-09 66.6 44 84.1
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 3.0e-09 66.6 94 48.9
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-08 64.7 36 80.6
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 1.1e-08 64.7 36 80.6
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 3.3e-08 63.2 36 77.8
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 3.1e-06 56.6 90 46.7
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 6.9e-06 55.5 87 46.0


User provided reference genes

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