Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.4e-111 406.4 209 100.0
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.5e-99 365.2 209 92.8
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.5e-97 359.8 209 90.9
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 7.0e-68 261.2 223 66.4
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.0e-66 257.3 220 68.2
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 8.6e-66 254.2 226 65.9
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.2e-64 250.4 224 64.7
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.1e-60 235.3 217 63.1
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.0e-60 234.6 217 62.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.2e-59 233.8 217 62.7
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.1e-52 210.7 209 57.9
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.1e-51 206.5 206 58.3
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 4.6e-51 205.3 206 58.3
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.0e-50 204.1 209 58.9
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 3.1e-47 192.6 224 52.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.6e-46 189.5 213 53.5
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 5.8e-46 188.3 215 52.6
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.3e-45 187.2 203 55.2
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.3e-45 187.2 214 52.8
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.3e-45 187.2 200 58.0
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.7e-45 186.8 213 53.5
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 2.2e-45 186.4 212 52.8
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.8e-45 185.7 216 51.4
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.9e-45 185.3 213 52.1
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 3.2e-44 182.6 195 52.8
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.6e-43 180.3 196 54.6
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.7e-43 179.5 215 53.5
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.2e-40 168.3 219 52.1
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.8e-39 166.8 221 49.3
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 4.0e-39 165.6 205 50.2
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 9.0e-39 164.5 197 50.3
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 2.0e-38 163.3 228 48.7
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.0e-38 163.3 201 51.2
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 3.4e-38 162.5 212 49.1
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 4.4e-38 162.2 204 49.0
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.6e-38 161.4 216 51.4
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 7.6e-38 161.4 216 51.4
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 4.9e-37 158.7 222 48.2
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.4e-36 157.1 200 51.0
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 9.3e-36 154.5 216 49.1
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-35 154.1 220 46.4
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.2e-35 154.1 226 46.5
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.6e-35 153.7 209 50.2
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.6e-35 152.1 216 50.9
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 6.0e-35 151.8 216 49.5
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 6.0e-35 151.8 218 45.9
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.0e-34 151.0 216 46.3
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.3e-34 150.6 211 46.4
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.7e-34 150.2 218 44.5
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 2.3e-34 149.8 211 48.3
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 5.1e-34 148.7 204 47.1
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 6.6e-34 148.3 216 47.7
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.1e-33 147.5 211 46.9
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.5e-33 146.4 221 47.1
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.3e-33 146.0 219 42.5
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.3e-33 146.0 214 44.4
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 4.3e-33 145.6 193 47.2
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.6e-33 145.2 214 43.0
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 4.8e-32 142.1 234 45.7
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 4.8e-32 142.1 192 46.9
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 6.9e-31 138.3 217 44.2
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 9.0e-31 137.9 168 52.4
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.2e-30 137.5 203 44.3
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.5e-30 137.1 219 45.2
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.5e-30 137.1 216 44.9
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 4.5e-30 135.6 204 46.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 4.5e-30 135.6 218 45.9
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 5.8e-30 135.2 141 56.7
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 5.8e-30 135.2 201 44.3
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.3e-29 134.0 206 43.2
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.9e-29 132.9 203 42.9
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.9e-29 132.1 202 44.1
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.1e-28 131.0 215 44.7
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 2.4e-28 129.8 192 46.9
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.5e-27 125.9 200 44.0
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.5e-27 125.9 201 44.8
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 6.0e-27 125.2 177 45.2
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.7e-26 121.7 223 42.2
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 8.7e-26 121.3 203 39.4
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.5e-25 120.6 166 45.8
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.5e-25 120.6 199 43.7
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.9e-25 120.2 212 44.3
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.9e-25 120.2 204 43.1
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 3.3e-25 119.4 195 43.6
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.3e-25 119.4 219 42.5
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 5.6e-25 118.6 180 46.7
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 7.4e-25 118.2 221 40.7
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.1e-24 116.7 163 43.6
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 2.8e-24 116.3 222 38.7
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 6.2e-24 115.2 65 89.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 8.1e-24 114.8 216 43.1
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-23 114.4 65 87.7
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 6.9e-23 111.7 218 37.6
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.6e-22 109.8 132 50.8
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 3.4e-22 109.4 192 42.7
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 4.5e-22 109.0 216 39.4
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 7.6e-22 108.2 201 43.3
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.3e-21 107.5 189 39.2
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.3e-21 107.5 144 47.9
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.7e-21 107.1 218 35.3
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 2.9e-21 106.3 62 87.1
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 3.8e-21 105.9 193 39.4
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 4.2e-20 102.4 215 39.1
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 5.5e-20 102.1 208 39.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 5.5e-20 102.1 202 39.6
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.1e-20 101.7 177 41.8
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 1.6e-19 100.5 206 41.7
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.6e-19 100.5 194 40.7
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 3.5e-19 99.4 194 41.2
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 4.6e-19 99.0 227 37.9
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.6e-19 99.0 169 42.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 6.0e-19 98.6 202 40.6
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 5.1e-18 95.5 212 39.2
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 5.1e-18 95.5 192 40.1
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 5.1e-18 95.5 188 38.8
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 8.7e-18 94.7 177 40.7
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.9e-17 93.6 198 39.4
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.9e-17 93.6 184 42.4
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.9e-17 93.6 185 40.0
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.9e-17 93.6 184 42.4
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 3.3e-17 92.8 209 37.3
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 4.3e-17 92.4 197 38.1
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 5.7e-17 92.0 183 41.5
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 9.6e-17 91.3 195 40.5
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 9.6e-17 91.3 195 40.0
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.3e-16 90.9 197 40.1
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.3e-16 90.9 198 38.9
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.1e-16 90.1 201 38.8
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.1e-16 90.1 201 38.8
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 6.2e-16 88.6 198 38.4
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 6.2e-16 88.6 189 39.2
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-15 87.8 199 38.7
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-15 87.4 195 39.0
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.4e-15 87.4 183 39.9
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.8e-15 87.0 199 39.7
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 6.9e-15 85.1 214 34.1
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 6.9e-15 85.1 187 38.5
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 9.0e-15 84.7 186 40.3
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 4.5e-14 82.4 184 35.9
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 4.5e-14 82.4 148 40.5
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 5.8e-14 82.0 87 55.2
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.7e-13 80.5 119 44.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 2.2e-13 80.1 180 34.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 6.5e-13 78.6 182 38.5
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 4.2e-12 75.9 194 33.0
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 4.2e-12 75.9 53 69.8
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.2e-11 74.3 188 34.6
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 1.6e-11 73.9 174 39.1
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 2.7e-11 73.2 141 43.3
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 2.7e-11 73.2 109 39.4
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.7e-11 73.2 198 32.8
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 6.7e-10 68.6 181 37.0
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 1.9e-09 67.0 178 36.0
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 3.3e-09 66.2 225 29.3
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 4.3e-09 65.9 180 36.1
ClCG01G022190 Citrullus lanatus HOM05D004361 ORTHO05D004706 4.3e-09 65.9 207 30.4
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.6e-08 63.9 164 37.2
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 3.7e-08 62.8 88 45.5
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 1.1e-07 61.2 186 33.3
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 2.0e-06 57.0 53 54.7


User provided reference genes

Program Settings