Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 7.5e-261 903.3 447 100.0
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.4e-259 898.3 447 99.6
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.4e-251 871.7 447 96.4
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.4e-185 653.3 454 74.4
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.0e-177 627.1 413 77.5
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 5.8e-160 568.2 413 67.8
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 6.4e-159 564.7 413 67.8
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 1.4e-158 563.5 419 68.7
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.9e-155 553.1 460 63.3
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.2e-154 550.4 457 64.1
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 4.6e-149 531.9 443 59.8
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.8e-146 522.7 416 63.5
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.8e-145 520.0 443 60.5
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 1.8e-145 520.0 450 62.2
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 3.1e-145 519.2 418 65.6
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 4.0e-145 518.8 418 64.1
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 6.8e-145 518.1 413 63.0
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 6.8e-145 518.1 432 63.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.2e-144 517.3 413 64.6
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 2.0e-144 516.5 415 65.3
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 9.9e-144 514.2 476 58.2
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 2.9e-143 512.7 418 63.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 3.7e-143 512.3 414 65.0
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 3.7e-143 512.3 420 64.5
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 6.4e-143 511.5 414 64.7
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 7.1e-142 508.1 410 62.7
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 2.3e-140 503.1 437 61.6
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 3.0e-140 502.7 493 55.0
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.9e-140 502.3 414 63.5
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 8.6e-140 501.1 415 63.1
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.1e-139 500.7 421 61.8
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.5e-139 500.4 469 58.8
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 2.5e-139 499.6 472 57.6
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 5.6e-139 498.4 435 59.8
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 9.5e-139 497.7 461 58.1
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 8.1e-138 494.6 435 60.0
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 1.2e-136 490.7 458 57.9
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 7.6e-136 488.0 445 55.7
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 2.9e-135 486.1 473 57.5
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 2.9e-135 486.1 433 58.9
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 2.9e-135 486.1 433 59.8
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 2.9e-135 486.1 435 59.3
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 6.4e-135 485.0 522 54.4
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.9e-134 483.4 433 59.4
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 1.2e-133 480.7 463 56.6
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.0e-132 477.6 453 58.9
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 2.3e-132 476.5 422 61.1
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 3.0e-132 476.1 455 57.8
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.9e-131 473.4 453 57.2
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 3.3e-131 472.6 426 59.9
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.3e-131 472.6 404 60.1
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 3.3e-131 472.6 459 57.1
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 1.6e-130 470.3 491 54.0
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.6e-130 470.3 482 55.4
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 4.7e-130 468.8 427 60.7
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.1e-129 467.6 430 59.5
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 2.4e-129 466.5 430 59.8
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 9.0e-129 464.5 511 52.6
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 2.0e-128 463.4 428 58.9
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.4e-128 462.6 506 50.4
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 3.4e-128 462.6 415 57.3
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 5.8e-128 461.8 427 57.6
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 5.8e-128 461.8 452 53.5
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 9.9e-128 461.1 497 50.9
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 1.3e-127 460.7 413 59.6
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 2.2e-127 459.9 413 59.3
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 4.9e-127 458.8 451 58.1
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 2.4e-126 456.4 419 58.9
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 5.4e-126 455.3 536 48.3
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.6e-125 453.8 411 59.1
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.6e-125 453.8 502 51.6
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 6.0e-125 451.8 422 58.8
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 7.8e-125 451.4 415 58.6
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 3.9e-124 449.1 550 47.1
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 1.9e-123 446.8 500 51.0
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 3.3e-123 446.0 432 56.5
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 5.6e-123 445.3 481 54.3
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.1e-122 443.4 423 56.0
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 3.6e-122 442.6 421 56.8
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 6.2e-122 441.8 458 49.3
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.0e-121 439.1 424 55.0
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 5.3e-121 438.7 434 53.7
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 9.0e-121 438.0 517 48.0
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 1.8e-116 423.7 280 70.4
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 2.8e-114 416.4 282 69.5
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 9.9e-112 407.9 311 63.3
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 1.3e-111 407.5 302 62.9
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.5e-110 403.3 379 54.4
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 5.5e-110 402.1 270 68.9
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 5.1e-108 395.6 436 49.1
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-107 394.4 274 67.5
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 9.6e-107 391.3 417 51.8
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.2e-104 384.4 513 44.6
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.0e-104 383.6 484 45.0
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 2.0e-104 383.6 274 66.1
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 7.6e-104 381.7 273 67.0
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 5.5e-102 375.6 525 43.2
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 5.5e-102 375.6 277 61.4
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.1e-101 373.6 313 59.7
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.8e-100 370.5 276 63.8
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 3.3e-99 366.3 283 63.3
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 8.2e-98 361.7 268 62.7
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 3.4e-96 356.3 269 60.2
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 5.0e-95 352.4 268 59.3
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 1.4e-94 350.9 272 60.7
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 2.7e-93 346.7 267 58.8
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 1.5e-91 340.9 232 69.8
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.4e-86 324.3 248 60.9
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 7.9e-85 318.5 271 57.9
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 7.4e-83 312.0 196 75.0
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.7e-82 310.8 281 53.7
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.8e-82 310.1 271 57.2
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.3e-82 308.9 286 55.2
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.2e-78 296.6 272 56.2
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 5.5e-70 269.2 192 66.1
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 6.1e-69 265.8 178 69.1
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.8e-66 256.9 234 54.7
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.2e-62 243.4 289 47.1
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 2.6e-59 233.8 207 62.3
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 5.4e-57 226.1 226 58.8
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 2.7e-56 223.8 271 43.9
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.5e-54 217.2 289 42.9
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 9.8e-51 205.3 139 66.2
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.8e-49 201.1 175 57.7
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 5.9e-48 196.1 254 42.1
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 3.9e-47 193.4 221 54.3
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 1.6e-45 188.0 133 66.2
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 1.8e-44 184.5 138 62.3
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 3.4e-43 180.3 312 34.9
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 2.4e-41 174.1 291 37.8
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 5.0e-39 166.4 102 70.6
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.3e-38 162.5 168 50.6
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 7.5e-35 152.5 297 33.0
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 1.8e-28 131.3 257 39.7
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 8.9e-28 129.0 311 30.2
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 8.3e-26 122.5 98 56.1
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 9.2e-25 119.0 119 48.7
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 3.5e-24 117.1 303 28.7
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.9e-23 113.6 74 73.0
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 8.4e-18 95.9 145 51.0
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 3.9e-15 87.0 179 34.1
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.5e-14 84.3 55 61.8
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 6.2e-13 79.7 106 41.5
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 6.2e-13 79.7 151 35.1
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.4e-11 73.9 65 55.4
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 6.4e-10 69.7 67 49.3
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.0e-07 60.8 103 34.0
Os07g0510350 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.6e-06 56.6 46 52.2


User provided reference genes

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