Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 9.2e-75 283.5 145 100.0
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.6e-74 281.2 145 98.6
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 9.5e-72 273.5 145 97.2
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 5.8e-53 211.1 145 74.5
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 4.1e-51 204.9 145 73.8
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 3.0e-49 198.7 147 70.7
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 4.3e-48 194.9 121 79.3
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 5.6e-48 194.5 146 73.3
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 5.6e-48 194.5 146 69.9
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 6.2e-47 191.0 145 71.0
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 3.1e-46 188.7 146 68.5
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 3.4e-45 185.3 147 66.7
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 7.6e-45 184.1 148 68.9
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 9.9e-45 183.7 147 68.0
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 2.2e-44 182.6 147 65.3
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.1e-43 180.3 147 64.6
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.1e-43 180.3 146 68.5
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.1e-43 180.3 145 66.2
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.4e-43 179.9 148 64.9
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.4e-43 179.9 149 65.8
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 4.2e-43 178.3 149 65.1
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 9.3e-43 177.2 149 63.8
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 9.3e-43 177.2 149 63.8
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 1.0e-41 173.7 149 63.1
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.7e-41 172.9 149 61.7
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.3e-41 172.6 149 62.4
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 3.0e-41 172.2 149 66.4
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 3.9e-41 171.8 146 65.1
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.1e-41 171.4 150 63.3
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 6.6e-41 171.0 148 60.1
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.5e-40 169.9 148 63.5
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.9e-40 169.5 169 56.2
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 4.3e-40 168.3 151 63.6
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 5.6e-40 167.9 151 63.6
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 7.3e-40 167.5 149 62.4
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.3e-39 166.8 146 64.4
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 3.6e-39 165.2 148 62.2
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.1e-38 163.7 148 61.5
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.1e-38 163.7 148 61.5
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.1e-38 163.7 141 62.4
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 1.4e-38 163.3 147 62.6
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 1.8e-38 162.9 148 62.2
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 3.1e-38 162.2 148 61.5
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 6.9e-38 161.0 147 61.2
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 9.0e-38 160.6 148 60.1
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 9.0e-38 160.6 149 60.4
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.2e-37 160.2 145 62.1
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 2.6e-37 159.1 148 59.5
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 2.6e-37 159.1 149 59.7
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 2.6e-37 159.1 152 61.2
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 3.4e-37 158.7 145 61.4
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 4.5e-37 158.3 146 61.6
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 5.8e-37 157.9 154 63.0
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 1.7e-36 156.4 154 62.3
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.7e-36 156.4 148 60.1
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 2.9e-36 155.6 154 62.3
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 2.9e-36 155.6 154 61.7
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.9e-36 155.6 149 61.1
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 4.9e-36 154.8 145 63.4
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 8.4e-36 154.1 155 59.4
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.4e-35 153.3 145 63.4
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 3.2e-35 152.1 158 60.8
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 3.2e-35 152.1 160 56.9
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 4.2e-35 151.8 152 58.6
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 5.4e-35 151.4 139 60.4
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 3.5e-34 148.7 152 60.5
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 4.6e-34 148.3 155 60.6
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 6.0e-34 147.9 170 55.3
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 7.9e-34 147.5 148 62.2
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.3e-33 146.7 144 58.3
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.8e-33 146.4 150 59.3
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 2.3e-33 146.0 147 61.9
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 3.0e-33 145.6 158 57.6
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 3.0e-33 145.6 150 60.0
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 6.7e-33 144.4 152 59.2
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 1.1e-32 143.7 145 54.5
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 1.1e-32 143.7 152 59.2
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 4.3e-32 141.7 147 57.8
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 5.6e-32 141.4 149 55.7
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 5.6e-32 141.4 148 62.2
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 7.4e-32 141.0 151 58.3
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 7.4e-32 141.0 147 57.8
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 4.8e-31 138.3 151 58.3
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 8.1e-31 137.5 127 55.9
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 3.1e-30 135.6 146 54.8
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 5.3e-30 134.8 93 77.4
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.0e-29 132.9 154 55.2
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 3.4e-29 132.1 134 59.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 4.5e-29 131.7 146 58.2
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 9.9e-29 130.6 167 49.1
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.3e-28 130.2 157 50.3
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 1.7e-28 129.8 122 57.4
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 2.2e-28 129.4 164 51.2
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 2.9e-28 129.0 154 54.5
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 1.1e-27 127.1 160 49.4
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.2e-26 123.6 159 49.1
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 3.3e-24 115.5 131 50.4
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 4.3e-24 115.2 146 54.1
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 2.1e-23 112.8 133 48.1
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 7.6e-21 104.4 129 53.5
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 2.2e-20 102.8 134 49.3
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 2.9e-20 102.4 146 42.5
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 3.2e-19 99.0 127 50.4
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 4.2e-19 98.6 160 40.6
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 1.2e-18 97.1 80 63.8
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 1.2e-18 97.1 145 51.0
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.2e-18 97.1 125 49.6
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.0e-17 94.0 93 52.7
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 1.3e-17 93.6 120 49.2
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 3.9e-17 92.0 173 40.5
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 1.9e-16 89.7 96 51.0
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 5.7e-16 88.2 115 47.0
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 6.3e-15 84.7 90 46.7
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 3.1e-14 82.4 102 46.1
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.5e-13 80.1 104 44.2
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 8.5e-12 74.3 128 41.4
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 2.1e-10 69.7 96 43.8
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 2.1e-10 69.7 97 41.2
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 2.7e-10 69.3 52 63.5
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 1.4e-09 67.0 58 58.6
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.0e-09 65.9 50 70.0
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 2.0e-08 63.2 127 33.9
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 2.5e-08 62.8 93 40.9
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 4.3e-08 62.0 91 42.9
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 9.7e-08 60.8 40 72.5
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.7e-07 60.1 42 69.0
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 1.4e-06 57.0 96 41.7
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 2.4e-06 56.2 48 58.3
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 2.4e-06 56.2 97 36.1


User provided reference genes

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