Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 1.5e-240 835.9 439 100.0
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 9.7e-237 823.2 439 98.4
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.5e-216 756.1 439 90.2
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 6.4e-164 581.3 446 70.6
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 3.1e-142 509.2 453 63.8
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 6.3e-119 431.8 454 57.7
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 3.0e-113 412.9 467 55.5
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 8.8e-113 411.4 464 55.2
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.2e-112 411.0 456 55.5
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.6e-112 409.8 465 54.6
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 5.7e-112 408.7 474 55.7
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.6e-109 400.6 474 54.0
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 2.7e-109 399.8 444 53.8
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 2.7e-109 399.8 445 53.7
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 9.5e-107 391.3 450 54.9
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 3.6e-106 389.4 447 54.8
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 6.8e-105 385.2 479 50.5
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.2e-104 384.4 455 54.3
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 2.0e-104 383.6 461 53.6
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 2.6e-104 383.3 617 44.2
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 5.7e-104 382.1 449 53.5
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 5.4e-102 375.6 452 52.4
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.0e-101 373.6 473 52.0
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 7.8e-101 371.7 456 51.1
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.1e-99 367.9 465 51.6
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 5.6e-99 365.5 453 51.2
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.2e-98 364.4 529 46.7
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 2.8e-98 363.2 469 49.5
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.8e-97 360.5 449 50.3
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 4.4e-96 355.9 481 49.5
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.4e-94 350.1 434 50.9
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.2e-93 347.8 466 48.3
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 2.7e-93 346.7 442 50.5
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 5.0e-92 342.4 485 46.0
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 4.3e-91 339.3 444 49.1
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 7.3e-91 338.6 441 50.3
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 7.3e-91 338.6 441 50.3
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 2.1e-90 337.0 452 48.0
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 2.8e-90 336.7 366 52.2
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 3.6e-90 336.3 456 47.8
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 1.4e-89 334.3 445 50.6
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 2.3e-89 333.6 444 48.4
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.1e-89 333.2 456 49.8
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 4.0e-89 332.8 438 48.4
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 4.0e-89 332.8 444 47.5
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 4.0e-89 332.8 443 48.8
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.2e-88 331.3 507 45.8
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.6e-88 330.1 464 45.9
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 4.4e-88 329.3 461 48.4
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 7.5e-88 328.6 444 47.5
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 9.8e-88 328.2 449 45.9
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.7e-87 327.4 452 48.7
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 4.9e-87 325.9 460 47.8
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 6.4e-87 325.5 444 47.3
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 8.3e-87 325.1 444 48.0
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-86 324.7 450 45.8
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.9e-86 323.9 450 46.2
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.1e-85 320.5 453 45.5
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 2.1e-85 320.5 302 58.3
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.7e-85 320.1 458 48.7
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.5e-85 319.7 458 48.7
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.0e-84 318.2 465 45.2
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.3e-84 317.8 458 48.3
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 2.3e-84 317.0 407 49.1
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 1.9e-83 313.9 442 49.8
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.2e-82 311.2 408 47.8
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.8e-81 307.4 462 45.2
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.3e-81 307.0 354 52.5
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 3.1e-81 306.6 449 46.1
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 5.2e-81 305.8 465 45.6
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 5.2e-81 305.8 454 45.8
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 8.9e-81 305.1 459 46.0
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 7.6e-80 302.0 462 47.0
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 9.9e-80 301.6 464 46.3
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.3e-79 301.2 466 46.1
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.3e-79 301.2 378 50.5
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.3e-79 301.2 465 45.8
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.4e-78 297.7 457 42.5
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 4.1e-78 296.2 463 44.7
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 4.1e-78 296.2 454 46.9
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 5.4e-78 295.8 453 45.7
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 5.4e-78 295.8 458 46.7
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 9.2e-78 295.0 451 45.2
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 4.6e-77 292.7 463 42.5
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 6.0e-77 292.4 440 45.0
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 6.0e-77 292.4 359 49.6
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.7e-76 290.8 354 50.3
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 2.3e-76 290.4 448 44.6
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 6.6e-76 288.9 367 50.1
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 6.6e-76 288.9 443 48.1
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 6.6e-76 288.9 435 43.4
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 8.6e-76 288.5 431 43.6
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.5e-75 287.0 473 42.7
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 4.3e-75 286.2 425 46.6
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 7.3e-75 285.4 451 45.2
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 7.3e-75 285.4 410 45.9
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 2.8e-74 283.5 447 44.7
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 3.6e-74 283.1 447 44.5
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 3.6e-74 283.1 454 44.7
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 3.6e-74 283.1 439 44.4
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 3.6e-74 283.1 359 48.5
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 6.2e-74 282.3 436 45.0
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 6.2e-74 282.3 426 44.1
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 3.1e-73 280.0 411 45.7
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 5.2e-73 279.3 350 48.6
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 6.8e-73 278.9 454 43.6
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 8.9e-73 278.5 394 45.7
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 2.6e-72 276.9 445 43.8
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 7.1e-70 268.9 429 42.4
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 7.8e-69 265.4 420 42.4
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 1.3e-68 264.6 257 57.2
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.7e-68 264.2 320 49.7
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.5e-67 261.2 422 42.9
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.9e-67 260.8 471 40.3
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.9e-67 260.8 406 45.8
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 3.1e-65 253.4 410 43.2
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.3e-65 252.7 466 39.9
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 3.4e-64 250.0 363 44.9
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 5.8e-64 249.2 395 42.5
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 3.2e-62 243.4 472 40.5
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.6e-60 235.7 305 47.5
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 8.7e-60 235.3 199 63.8
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.6e-58 231.1 277 50.5
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.1e-58 230.7 471 38.6
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.1e-58 230.7 471 38.6
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 3.1e-57 226.9 486 38.3
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.6e-56 223.8 403 40.4
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 5.8e-56 222.6 139 79.9
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.7e-55 221.1 240 54.6
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.8e-52 211.1 407 40.0
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 4.0e-49 199.9 113 88.5
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.2e-46 190.3 131 74.0
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.2e-46 190.3 131 74.0
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 1.6e-42 177.9 102 86.3
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 8.2e-42 175.6 314 37.6
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 1.2e-40 171.8 116 80.2
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 5.8e-40 169.5 333 42.3
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.3e-39 168.3 316 42.1
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.3e-35 153.7 95 80.0
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.1e-30 138.7 133 51.9
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 1.9e-30 137.9 115 60.0
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 4.2e-30 136.7 77 88.3
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 3.9e-28 130.2 369 33.6
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 3.7e-26 123.6 261 37.2
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.9e-22 111.3 64 84.4
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 7.9e-21 105.9 296 30.7
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 1.8e-20 104.8 67 77.6
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 8.2e-18 95.9 106 50.9
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.1e-17 95.5 305 32.8
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.8e-17 94.7 91 53.8
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 5.3e-17 93.2 105 45.7
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 7.7e-16 89.4 60 76.7
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.2e-13 82.0 92 51.1
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.6e-13 81.6 61 67.2
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.0e-12 79.0 321 31.2
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 7.0e-09 66.2 34 91.2
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 7.7e-08 62.8 105 36.2
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.3e-07 62.0 67 53.7
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 2.2e-07 61.2 53 56.6
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 6.5e-07 59.7 77 45.5
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 2.5e-06 57.8 105 33.3
EL10Ac9g21844 Beta vulgaris HOM05D001651 ORTHO05D000277 7.2e-06 56.2 194 31.4
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 9.4e-06 55.8 44 56.8
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 9.4e-06 55.8 44 56.8
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 9.4e-06 55.8 44 56.8


User provided reference genes

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