Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 9.7e-206 719.9 366 100.0
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.4e-204 715.3 366 99.5
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.6e-203 711.8 366 98.9
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 9.4e-185 650.2 363 90.6
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 1.4e-183 646.4 364 90.1
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 9.8e-182 640.2 364 89.6
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 7.8e-155 550.8 373 74.3
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 5.8e-150 534.6 366 73.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.3e-149 533.5 363 73.3
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 1.3e-149 533.5 363 74.4
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 1.7e-149 533.1 367 74.4
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.7e-149 533.1 363 73.8
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 8.3e-149 530.8 366 72.4
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 2.4e-148 529.3 405 67.4
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 3.2e-148 528.9 366 72.4
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.2e-147 526.9 365 72.6
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 1.0e-146 523.9 350 74.9
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 1.3e-146 523.5 363 72.2
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.1e-145 520.4 362 72.4
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 1.1e-145 520.4 362 72.9
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 1.1e-145 520.4 362 71.8
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 5.6e-145 518.1 381 69.3
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 9.5e-145 517.3 366 71.0
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 1.4e-143 513.5 363 70.2
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 2.6e-142 509.2 390 67.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 3.4e-142 508.8 417 65.0
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 5.8e-142 508.1 359 71.0
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.7e-141 506.5 351 71.5
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.4e-140 503.4 362 69.3
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 1.9e-140 503.1 361 70.9
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 2.4e-140 502.7 363 70.0
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 3.2e-140 502.3 342 72.5
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.6e-139 500.0 399 65.4
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 4.6e-139 498.4 355 69.6
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 7.8e-139 497.7 366 69.1
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.0e-138 497.3 363 69.4
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 3.9e-138 495.4 354 70.1
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 8.6e-138 494.2 363 69.1
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 1.1e-137 493.8 358 72.1
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 2.5e-137 492.7 400 67.2
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 5.6e-137 491.5 387 66.1
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 2.8e-136 489.2 346 69.7
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.4e-135 486.9 335 71.3
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 1.8e-135 486.5 401 63.1
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 3.1e-135 485.7 459 57.7
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 8.9e-135 484.2 404 63.6
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 1.2e-134 483.8 382 64.7
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 2.6e-134 482.6 374 67.1
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 3.4e-134 482.3 354 68.1
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 5.8e-134 481.5 410 61.2
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 5.8e-134 481.5 409 61.6
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 9.9e-134 480.7 404 62.9
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 9.9e-134 480.7 359 68.0
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 9.9e-134 480.7 417 60.9
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 1.3e-133 480.3 398 63.6
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 1.3e-133 480.3 409 61.9
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 1.7e-133 479.9 372 66.7
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 2.2e-133 479.6 410 61.5
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 2.9e-133 479.2 413 61.5
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 2.9e-133 479.2 409 60.9
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.4e-132 476.9 387 63.6
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 3.2e-132 475.7 417 60.9
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 5.4e-132 474.9 401 62.1
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 5.4e-132 474.9 401 62.1
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 5.4e-132 474.9 402 61.9
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 7.1e-132 474.6 411 60.8
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 1.2e-131 473.8 413 60.5
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 1.6e-131 473.4 368 67.4
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 2.1e-131 473.0 411 60.6
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 3.5e-131 472.2 350 66.0
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 6.6e-130 468.0 370 64.1
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.1e-129 467.2 407 59.5
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 7.3e-129 464.5 324 70.7
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 4.8e-128 461.8 419 59.9
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.1e-127 460.7 360 64.7
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 2.4e-127 459.5 326 69.3
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 5.3e-127 458.4 343 66.5
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 7.6e-126 454.5 352 65.9
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 3.8e-125 452.2 371 65.2
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.9e-124 449.9 358 62.8
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 7.1e-124 448.0 414 58.2
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.6e-123 446.8 356 64.9
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 2.1e-123 446.4 310 71.6
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 3.5e-123 445.7 447 55.7
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 1.3e-122 443.7 377 63.1
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.7e-122 443.4 361 66.5
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 3.0e-122 442.6 362 63.0
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.9e-122 442.2 343 64.7
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 3.9e-122 442.2 381 61.4
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.1e-121 440.7 356 66.0
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 2.5e-121 439.5 339 65.5
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 1.2e-118 430.6 355 65.1
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 2.6e-118 429.5 403 58.3
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 7.6e-118 427.9 349 62.5
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 6.4e-117 424.9 369 61.0
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 1.1e-116 424.1 349 63.9
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.9e-116 423.3 369 58.5
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.6e-115 420.2 270 79.6
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 3.5e-115 419.1 352 61.1
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.5e-113 413.7 340 64.7
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.5e-113 413.7 340 64.7
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.9e-113 413.3 340 65.0
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.5e-113 412.9 340 64.7
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.3e-113 412.5 340 64.7
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 5.3e-111 405.2 298 68.5
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 5.3e-111 405.2 298 68.5
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 3.4e-110 402.5 354 59.3
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.8e-103 380.2 353 57.5
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 3.0e-98 362.8 320 56.2
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 9.7e-97 357.8 366 52.5
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 7.2e-92 341.7 342 51.8
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 5.0e-85 318.9 313 51.4
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.5e-81 307.4 214 71.0
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 4.7e-75 285.8 363 46.3
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.6e-70 270.8 235 58.7
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.5e-68 264.2 213 61.0
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.6e-67 260.8 150 87.3
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.2e-66 255.8 215 60.5
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 2.2e-61 240.4 157 78.3
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 2.1e-59 233.8 390 37.2
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 9.8e-57 224.9 257 48.6
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 9.5e-52 208.4 148 72.3
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.4e-49 199.5 128 75.8
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.7e-49 199.1 115 85.2
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.5e-44 184.5 126 74.6
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.4e-39 167.2 160 55.6
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.2e-25 121.7 81 71.6
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.3e-21 107.5 150 44.0
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 7.3e-20 102.4 73 67.1
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 2.7e-14 84.0 417 22.5
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.3e-13 80.9 67 62.7
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 6.9e-10 69.3 59 66.1
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 2.6e-09 67.4 56 64.3
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 3.4e-09 67.0 59 55.9


User provided reference genes

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