Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 9.6e-167 590.1 303 100.0
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.3e-159 564.7 347 87.0
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 5.9e-140 501.1 342 77.8
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 1.0e-139 500.4 347 78.1
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.0e-136 490.3 341 76.8
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.8e-128 463.0 341 71.8
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.7e-127 458.0 339 71.1
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 4.4e-119 431.8 342 69.3
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-117 426.8 280 83.2
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 2.3e-112 409.5 351 61.3
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.0e-112 409.1 342 62.9
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.5e-111 406.8 334 63.8
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.6e-111 406.0 338 63.6
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 2.6e-111 406.0 338 63.6
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 5.3e-109 398.3 329 62.6
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 3.5e-108 395.6 351 62.1
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 4.5e-108 395.2 350 60.9
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 7.7e-108 394.4 364 59.3
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 8.5e-107 391.0 335 63.0
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.1e-106 390.6 335 61.2
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.1e-106 390.6 348 59.2
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.5e-106 390.2 331 61.0
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.9e-106 389.8 330 61.5
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.9e-106 389.8 335 63.0
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 2.5e-106 389.4 334 60.2
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 2.5e-106 389.4 330 63.9
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 4.2e-106 388.7 338 61.8
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 4.2e-106 388.7 349 61.6
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 5.5e-106 388.3 340 61.2
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 1.2e-105 387.1 335 60.3
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 2.7e-105 386.0 329 62.3
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 2.7e-105 386.0 348 60.1
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.6e-105 385.6 316 62.7
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 6.1e-105 384.8 314 64.6
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 6.1e-105 384.8 330 63.0
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 8.0e-105 384.4 338 61.8
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 8.0e-105 384.4 338 60.4
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 2.3e-104 382.9 314 63.7
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 3.0e-104 382.5 314 62.7
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 3.0e-104 382.5 340 59.7
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.0e-104 382.5 338 60.4
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.0e-104 382.1 348 59.5
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 5.2e-104 381.7 354 61.0
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 5.2e-104 381.7 354 61.0
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 2.0e-103 379.8 340 60.3
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 3.4e-103 379.0 334 61.4
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 3.4e-103 379.0 345 57.4
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 9.8e-103 377.5 348 58.9
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.7e-102 376.7 345 58.0
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 3.7e-102 375.6 348 59.5
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 6.3e-102 374.8 348 58.3
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 1.1e-101 374.0 314 62.1
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 1.1e-101 374.0 314 62.1
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 1.1e-101 374.0 314 62.1
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.4e-101 373.6 332 59.3
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.4e-101 373.6 332 59.3
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 1.4e-101 373.6 332 59.3
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.8e-101 373.2 339 59.9
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 2.4e-101 372.9 330 60.9
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 3.1e-101 372.5 334 59.9
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 7.0e-101 371.3 348 58.0
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 7.0e-101 371.3 348 58.0
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 7.0e-101 371.3 345 58.3
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.6e-100 370.2 331 59.8
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 2.7e-100 369.4 314 60.8
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 4.5e-100 368.6 342 57.6
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 5.9e-100 368.2 335 59.4
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 3.2e-98 362.5 340 58.5
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 4.2e-98 362.1 340 58.8
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 8.8e-96 354.4 329 58.4
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.2e-95 354.0 315 58.4
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 1.2e-95 354.0 332 57.2
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 3.4e-95 352.4 342 57.0
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 4.4e-95 352.1 321 58.9
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 5.7e-95 351.7 350 55.7
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 7.5e-95 351.3 351 54.7
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 9.8e-95 350.9 334 56.9
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 2.2e-94 349.7 343 56.0
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 2.8e-94 349.4 347 54.2
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 8.3e-94 347.8 326 59.8
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 3.1e-93 345.9 330 57.0
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 7.0e-93 344.7 348 54.0
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 9.2e-93 344.4 321 57.0
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 1.2e-92 344.0 349 53.9
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.6e-92 343.6 338 56.5
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 3.5e-92 342.4 334 54.5
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 3.5e-92 342.4 339 53.1
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 4.5e-92 342.0 356 53.9
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 7.8e-92 341.3 330 54.5
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 1.0e-91 340.9 319 56.7
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.1e-90 337.4 319 55.5
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.5e-90 336.3 319 56.1
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 2.1e-89 333.2 335 54.3
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 4.7e-89 332.0 334 53.9
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.8e-88 330.1 336 54.5
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 9.8e-87 324.3 314 54.1
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 8.3e-86 321.2 347 50.7
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 1.2e-84 317.4 280 60.4
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.6e-84 317.0 338 52.1
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 2.7e-84 316.2 356 50.8
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 3.5e-84 315.8 322 51.9
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.0e-83 314.3 269 61.3
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 1.5e-82 310.5 314 54.1
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.5e-82 309.7 335 50.7
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.4e-80 303.9 338 49.4
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.1e-80 302.8 349 48.7
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 6.8e-80 301.6 335 49.9
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 2.6e-79 299.7 347 49.6
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.4e-79 298.9 336 52.1
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 5.8e-79 298.5 309 53.7
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 1.1e-77 294.3 266 59.0
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 3.5e-76 289.3 312 51.6
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.5e-76 289.3 333 50.2
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 3.0e-75 286.2 337 47.5
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.0e-75 285.4 345 47.8
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.5e-74 283.1 327 46.5
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 4.3e-74 282.3 314 47.1
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.6e-74 282.0 334 45.5
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.6e-74 282.0 303 50.5
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 7.3e-74 281.6 331 47.7
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.3e-74 281.6 326 48.8
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.4e-72 277.3 334 44.6
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 3.1e-72 276.2 313 48.6
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 4.0e-72 275.8 334 44.3
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 6.8e-72 275.0 325 48.6
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 8.9e-72 274.6 328 45.7
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 8.9e-72 274.6 321 48.0
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.2e-71 274.2 321 48.0
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 2.9e-70 269.6 315 46.7
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.1e-69 267.7 329 46.5
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.9e-69 266.9 325 45.2
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 5.4e-69 265.4 262 52.3
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 3.5e-68 262.7 339 44.0
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 3.0e-67 259.6 338 43.5
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 3.0e-67 259.6 249 55.0
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.5e-66 257.3 340 42.6
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.5e-66 257.3 340 42.6
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 1.9e-66 256.9 338 42.9
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 2.5e-66 256.5 336 44.0
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 3.3e-66 256.1 255 55.7
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.8e-65 253.1 329 43.2
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 6.8e-64 248.4 322 44.1
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.2e-63 247.7 349 40.7
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 2.2e-62 243.4 313 42.2
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 2.2e-62 243.4 267 51.3
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.1e-56 223.0 223 54.7
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.7e-54 217.2 123 82.1
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 8.4e-54 214.9 189 58.7
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.9e-53 213.8 314 42.4
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 2.7e-52 209.9 184 60.3
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.7e-52 209.9 191 56.5
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 3.0e-51 206.5 189 56.1
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.3e-50 203.0 189 56.6
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.5e-47 194.1 272 42.3
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.8e-46 189.5 121 70.2
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 8.4e-46 188.3 170 58.8
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 8.4e-46 188.3 155 64.5
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.1e-44 183.7 183 54.6
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 4.6e-44 182.6 340 36.8
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.6e-41 174.1 190 48.9
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 6.2e-41 172.2 232 41.4
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 8.1e-41 171.8 151 59.6
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-38 164.5 184 47.8
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.2e-31 141.4 148 49.3
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 2.6e-31 140.2 104 66.3
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 7.1e-29 132.1 92 65.2
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 3.9e-27 126.3 95 63.2
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 9.0e-24 115.2 77 70.1
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 1.1e-21 108.2 312 29.8
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 3.1e-16 90.1 75 60.0
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.7e-14 84.3 116 39.7
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 1.1e-13 81.6 57 68.4
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-13 81.6 85 52.9
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-13 81.3 45 80.0
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 7.2e-13 79.0 52 63.5
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 3.6e-12 76.6 57 59.6
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 3.0e-11 73.6 74 52.7
COL.COLO4_35765 Corchorus olitorius HOM05D003755 ORTHO05D160063 5.0e-06 56.2 33 84.8


User provided reference genes

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