Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 9.9e-74 280.0 141 100.0
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.1e-59 231.9 128 89.8
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.1e-59 231.9 128 89.8
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.2e-58 229.9 128 89.1
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.7e-57 226.1 128 87.5
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.9e-57 225.3 128 85.9
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.8e-57 224.9 128 86.7
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 6.4e-57 224.2 128 86.7
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 8.4e-57 223.8 128 85.2
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.2e-55 219.9 128 84.4
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 4.6e-55 218.0 128 84.4
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 7.9e-55 217.2 128 83.6
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 6.7e-54 214.2 128 83.6
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 9.6e-53 210.3 128 81.2
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 3.1e-51 205.3 128 78.9
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 5.3e-51 204.5 128 78.9
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 9.0e-51 203.8 128 78.1
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 9.0e-51 203.8 128 78.1
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 1.5e-50 203.0 128 77.3
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.5e-50 203.0 128 78.1
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 5.8e-50 201.1 128 78.1
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 7.6e-50 200.7 140 70.7
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 9.9e-50 200.3 128 75.0
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.2e-49 199.1 130 76.2
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 3.8e-49 198.4 136 70.6
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 6.4e-49 197.6 128 77.3
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 6.4e-49 197.6 140 69.3
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 8.4e-49 197.2 128 76.6
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 1.1e-48 196.8 128 75.0
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 1.1e-48 196.8 128 75.8
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 1.4e-48 196.4 128 77.3
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.4e-48 196.4 128 77.3
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.9e-48 196.1 128 74.2
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 1.9e-48 196.1 128 73.4
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.9e-48 196.1 128 74.2
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 2.4e-48 195.7 128 73.4
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.4e-48 195.7 128 73.4
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 3.2e-48 195.3 128 72.7
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 3.2e-48 195.3 128 75.0
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 4.2e-48 194.9 128 76.6
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 4.2e-48 194.9 128 73.4
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 4.2e-48 194.9 128 73.4
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 4.2e-48 194.9 128 73.4
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 5.5e-48 194.5 128 73.4
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 5.5e-48 194.5 128 74.2
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 5.5e-48 194.5 128 74.2
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 5.5e-48 194.5 128 76.6
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 5.5e-48 194.5 128 75.8
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 7.1e-48 194.1 128 74.2
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 7.1e-48 194.1 128 73.4
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 7.1e-48 194.1 128 71.9
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 9.3e-48 193.7 128 75.0
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 9.3e-48 193.7 139 69.8
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 9.3e-48 193.7 128 75.8
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 1.6e-47 193.0 128 74.2
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.6e-47 193.0 128 75.0
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.6e-47 193.0 128 71.1
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 2.7e-47 192.2 128 73.4
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 2.7e-47 192.2 128 72.7
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 2.7e-47 192.2 128 74.2
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 2.7e-47 192.2 125 74.4
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 3.5e-47 191.8 128 73.4
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 4.6e-47 191.4 128 71.9
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 4.6e-47 191.4 128 72.7
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 6.0e-47 191.0 127 72.4
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 6.0e-47 191.0 128 73.4
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 6.0e-47 191.0 128 72.7
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 6.0e-47 191.0 128 73.4
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 7.9e-47 190.7 128 72.7
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 1.0e-46 190.3 128 72.7
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.0e-46 190.3 128 71.1
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.0e-46 190.3 128 72.7
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.3e-46 189.9 128 71.9
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.8e-46 189.5 128 70.3
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.8e-46 189.5 128 70.3
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 1.8e-46 189.5 128 72.7
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.3e-46 189.1 128 71.1
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 3.0e-46 188.7 128 71.1
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 3.0e-46 188.7 128 72.7
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 3.0e-46 188.7 128 72.7
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 3.0e-46 188.7 128 70.3
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 3.0e-46 188.7 128 74.2
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 3.0e-46 188.7 128 71.9
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 3.9e-46 188.3 128 71.1
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 3.9e-46 188.3 128 71.1
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 6.7e-46 187.6 128 73.4
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.7e-46 187.6 128 70.3
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 6.7e-46 187.6 128 71.1
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 8.7e-46 187.2 128 71.1
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 8.7e-46 187.2 128 72.7
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-45 186.8 128 71.1
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 1.1e-45 186.8 128 71.1
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.1e-45 186.8 128 71.9
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 1.1e-45 186.8 128 68.8
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.1e-45 186.8 128 71.1
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.1e-45 186.8 128 68.8
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.1e-45 186.8 128 71.9
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.5e-45 186.4 128 71.9
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.5e-45 186.4 128 71.1
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.5e-45 186.4 128 71.1
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.9e-45 186.0 128 71.9
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.9e-45 186.0 128 70.3
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.5e-45 185.7 129 71.3
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 2.5e-45 185.7 128 70.3
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 3.3e-45 185.3 128 71.1
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 4.3e-45 184.9 128 68.0
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 5.6e-45 184.5 128 71.1
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 5.6e-45 184.5 128 70.3
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 5.6e-45 184.5 128 70.3
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 5.6e-45 184.5 128 69.5
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 7.4e-45 184.1 128 72.7
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 9.6e-45 183.7 128 69.5
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.3e-44 183.3 129 72.1
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.1e-44 182.6 128 68.8
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 2.8e-44 182.2 128 68.0
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.8e-44 182.2 128 70.3
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.8e-44 182.2 128 70.3
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.8e-44 182.2 128 70.3
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.8e-44 182.2 128 69.5
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 4.8e-44 181.4 128 69.5
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 6.2e-44 181.0 128 70.3
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 6.2e-44 181.0 128 68.0
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 1.8e-43 179.5 128 69.5
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.8e-43 179.5 128 69.5
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.8e-43 179.5 128 69.5
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 3.1e-43 178.7 128 68.0
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.2e-42 176.8 128 68.8
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 1.2e-42 176.8 130 66.2
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 2.2e-41 172.6 123 67.5
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 7.9e-39 164.1 128 60.9
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-38 163.3 128 60.9
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.7e-38 161.0 107 72.0
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 1.1e-37 160.2 128 60.2
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 5.7e-37 157.9 128 58.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 6.3e-36 154.5 127 57.5
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.3e-35 151.4 106 69.8
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 2.6e-34 149.1 98 71.4
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 7.6e-34 147.5 98 72.4
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-33 146.7 128 54.7
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-33 146.7 128 54.7
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.1e-32 143.7 98 69.4
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 2.5e-32 142.5 98 69.4
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 7.9e-31 137.5 128 56.2
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 4.3e-29 131.7 128 59.4
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 6.7e-22 107.8 87 65.5
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.4e-21 105.1 67 73.1
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.3e-20 103.6 67 71.6
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 3.4e-18 95.5 69 68.1
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.2e-10 70.5 47 72.3


User provided reference genes

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