Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.2e-35 151.8 77 100.0
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.2e-30 133.7 77 87.0
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-20 101.7 55 96.4
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-20 101.3 56 94.6
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-20 101.3 56 94.6
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.4e-20 101.3 56 94.6
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-19 99.8 60 86.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.2e-19 98.6 60 86.7
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.0e-19 97.4 56 91.1
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.9e-18 95.5 55 90.9
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.2e-17 92.8 56 85.7
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-17 92.8 60 80.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.6e-17 92.4 55 87.3
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 1.6e-17 92.4 55 89.1
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.1e-17 92.0 56 83.9
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.7e-17 91.7 56 83.9
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.6e-17 91.3 56 85.7
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 3.6e-17 91.3 56 82.1
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 3.6e-17 91.3 56 83.9
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.6e-17 90.9 54 87.0
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 4.6e-17 90.9 56 82.1
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 6.1e-17 90.5 59 76.3
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 6.1e-17 90.5 55 83.6
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 6.1e-17 90.5 56 82.1
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.1e-17 90.5 56 82.1
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 7.9e-17 90.1 58 81.0
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 7.9e-17 90.1 60 75.0
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.0e-16 89.7 56 80.4
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.0e-16 89.7 55 83.6
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-16 89.7 56 83.9
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.0e-16 89.7 56 82.1
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.3e-16 89.4 55 81.8
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.8e-16 89.0 55 80.0
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.8e-16 89.0 56 80.4
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.8e-16 89.0 56 80.4
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.3e-16 88.6 56 78.6
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 3.0e-16 88.2 55 81.8
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.0e-16 88.2 56 80.4
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 3.0e-16 88.2 56 80.4
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.0e-16 88.2 56 80.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 3.0e-16 88.2 56 80.4
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 3.0e-16 88.2 55 80.0
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 3.9e-16 87.8 56 82.1
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 3.9e-16 87.8 55 78.2
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 5.1e-16 87.4 53 84.9
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 5.1e-16 87.4 55 78.2
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.7e-16 86.7 56 78.6
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 8.7e-16 86.7 56 76.8
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-15 86.3 56 76.8
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.1e-15 86.3 54 81.5
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.1e-15 86.3 55 78.2
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 2.5e-15 85.1 55 78.2
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 2.5e-15 85.1 56 78.6
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 3.3e-15 84.7 54 79.6
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 3.3e-15 84.7 55 76.4
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 3.3e-15 84.7 55 76.4
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.3e-15 84.7 48 91.7
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.3e-15 84.7 56 76.8
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 4.3e-15 84.3 55 76.4
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 7.4e-15 83.6 51 80.4
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.3e-14 82.8 55 76.4
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 2.2e-14 82.0 54 77.8
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.8e-14 81.6 52 78.8
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 2.8e-14 81.6 56 76.8
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 2.8e-14 81.6 56 76.8
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 2.8e-14 81.6 54 75.9
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.7e-14 81.3 50 82.0
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.7e-14 81.3 52 80.8
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 4.8e-14 80.9 49 83.7
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 8.2e-14 80.1 50 80.0
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-13 79.7 52 76.9
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.4e-13 79.3 49 81.6
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 2.4e-13 78.6 53 75.5
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 3.1e-13 78.2 56 75.0
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 3.1e-13 78.2 49 83.7
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 3.1e-13 78.2 49 81.6
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 4.1e-13 77.8 53 75.5
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.1e-13 77.8 49 81.6
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 9.1e-13 76.6 52 73.1
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 9.1e-13 76.6 52 73.1
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 9.1e-13 76.6 48 81.2
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-12 76.3 55 80.0
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 1.2e-12 76.3 54 70.4
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.6e-12 75.1 48 79.2
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 2.6e-12 75.1 54 68.5
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 3.4e-12 74.7 46 82.6
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 5.9e-12 73.9 55 69.1
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 7.7e-12 73.6 46 80.4
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 7.7e-12 73.6 50 76.0
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.0e-11 73.2 45 82.2
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.0e-11 73.2 45 82.2
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 1.0e-11 73.2 46 80.4
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-11 72.8 54 72.2
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 1.7e-11 72.4 96 49.0
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.2e-11 72.0 47 78.7
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.1e-10 69.7 38 92.1
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.9e-10 68.9 51 68.6
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 2.5e-10 68.6 45 75.6
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 1.2e-09 66.2 45 73.3
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 3.6e-09 64.7 77 51.9
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 4.6e-09 64.3 35 91.4
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 6.1e-09 63.9 39 82.1
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 6.1e-09 63.9 39 82.1
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 7.9e-09 63.5 38 84.2
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 7.9e-09 63.5 38 84.2
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 1.8e-08 62.4 40 77.5
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.8e-08 62.4 38 81.6
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 3.0e-08 61.6 48 68.8
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 5.1e-08 60.8 37 81.1
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 6.7e-08 60.5 55 60.0
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-07 59.3 37 81.1
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.5e-07 59.3 37 78.4
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-07 59.3 33 87.9
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.5e-07 59.3 37 78.4
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 2.0e-07 58.9 35 82.9
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 2.6e-07 58.5 36 80.6
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.3e-07 58.2 30 93.3
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.3e-07 58.2 35 80.0
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.7e-07 56.6 30 90.0
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 9.7e-07 56.6 30 90.0
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-06 56.2 30 86.7
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-06 55.5 30 90.0
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.8e-06 55.1 34 82.4
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-06 55.1 30 86.7
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 2.8e-06 55.1 30 86.7
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-06 55.1 30 86.7
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.7e-06 54.7 33 78.8
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.7e-06 54.7 33 78.8


User provided reference genes

Program Settings