Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.3e-45 186.0 94 100.0
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.3e-45 186.0 94 100.0
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.0e-42 174.9 94 93.6
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 7.9e-35 150.2 95 81.1
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.4e-31 139.4 93 76.3
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.1e-23 111.7 91 56.0
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.1e-23 111.7 97 60.8
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 9.0e-23 110.2 92 56.5
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 1.5e-22 109.4 82 64.6
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 5.8e-22 107.5 96 58.3
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 7.6e-22 107.1 88 52.3
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.3e-21 106.3 96 55.2
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.7e-21 105.9 96 54.2
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 3.8e-21 104.8 69 66.7
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 3.8e-21 104.8 96 54.2
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.5e-21 104.0 94 55.3
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.1e-20 103.2 94 55.3
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.1e-20 103.2 94 55.3
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.4e-20 102.8 91 53.8
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.4e-20 102.8 93 51.6
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.5e-20 102.1 94 54.3
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 2.5e-20 102.1 93 51.6
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 5.5e-20 100.9 95 50.5
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.3e-20 100.1 99 52.5
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 9.3e-20 100.1 99 52.5
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.2e-19 99.8 93 54.8
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.6e-19 99.4 96 53.1
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.6e-19 99.4 95 52.6
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.6e-19 99.4 96 50.0
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-19 99.0 93 53.8
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.1e-19 99.0 99 51.5
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 2.1e-19 99.0 89 49.4
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 2.7e-19 98.6 97 48.5
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 6.0e-19 97.4 93 54.8
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 6.0e-19 97.4 93 48.4
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.3e-18 96.3 91 51.6
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.3e-18 96.3 92 50.0
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.3e-18 96.3 93 53.8
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.8e-18 95.9 95 50.5
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.3e-18 95.5 71 62.0
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-18 95.5 105 49.5
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 2.3e-18 95.5 95 48.4
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.0e-18 95.1 91 49.5
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.0e-18 95.1 92 53.3
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 5.1e-18 94.4 96 47.9
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 1.1e-17 93.2 96 49.0
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-17 92.8 92 47.8
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 2.5e-17 92.0 95 48.4
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 3.3e-17 91.7 93 49.5
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.3e-17 91.7 105 47.6
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.3e-17 91.3 87 49.4
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 7.4e-17 90.5 53 73.6
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 9.7e-17 90.1 104 47.1
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 9.7e-17 90.1 88 48.9
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 9.7e-17 90.1 90 46.7
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.3e-16 89.7 85 50.6
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.6e-16 89.4 93 50.5
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-16 89.4 83 53.0
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 2.2e-16 89.0 92 46.7
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.8e-16 88.6 91 46.2
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 2.8e-16 88.6 97 52.6
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 2.8e-16 88.6 97 52.6
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.7e-16 88.2 92 45.7
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 4.8e-16 87.8 93 45.2
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.8e-16 87.8 90 46.7
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-15 86.3 67 52.2
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.4e-15 85.5 95 44.2
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.1e-15 85.1 95 46.3
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.1e-15 85.1 95 46.3
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.1e-15 84.7 94 45.7
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.3e-15 84.3 92 48.9
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 5.3e-15 84.3 107 45.8
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.9e-15 84.0 94 44.7
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.0e-15 83.6 102 42.2
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.0e-15 83.6 52 67.3
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.2e-14 83.2 95 45.3
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 1.2e-14 83.2 86 45.3
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.2e-14 83.2 93 45.2
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.5e-14 82.8 88 46.6
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-14 82.8 91 44.0
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-14 82.8 86 48.8
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-14 82.4 90 44.4
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 2.6e-14 82.0 57 56.1
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 2.6e-14 82.0 91 42.9
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 2.6e-14 82.0 83 50.6
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 2.6e-14 82.0 93 45.2
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 3.4e-14 81.6 95 43.2
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.4e-14 81.6 66 57.6
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 4.5e-14 81.3 57 56.1
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 4.5e-14 81.3 85 45.9
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.5e-14 81.3 53 66.0
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 4.5e-14 81.3 86 46.5
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 4.5e-14 81.3 91 47.3
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 5.9e-14 80.9 97 48.5
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.9e-14 80.9 97 48.5
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 5.9e-14 80.9 96 43.8
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.0e-13 80.1 78 50.0
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.0e-13 80.1 93 44.1
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-13 79.7 88 45.5
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.3e-13 79.7 93 47.3
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.2e-13 79.0 88 43.2
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.2e-13 79.0 88 43.2
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.2e-13 79.0 89 40.4
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 2.2e-13 79.0 90 44.4
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.9e-13 78.6 95 40.0
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-13 78.6 94 38.3
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 3.8e-13 78.2 94 38.3
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 5.0e-13 77.8 93 43.0
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.0e-13 77.8 84 47.6
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 6.5e-13 77.4 80 47.5
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-12 76.6 77 42.9
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-12 76.3 109 35.8
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.4e-12 76.3 56 60.7
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.4e-12 76.3 56 60.7
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.9e-12 75.9 80 47.5
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 2.5e-12 75.5 90 38.9
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 2.5e-12 75.5 90 38.9
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-12 75.1 95 41.1
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 4.2e-12 74.7 63 55.6
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 5.5e-12 74.3 91 42.9
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.5e-12 74.3 77 46.8
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 5.5e-12 74.3 57 47.4
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 9.4e-12 73.6 72 45.8
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 9.4e-12 73.6 93 41.9
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 1.2e-11 73.2 93 40.9
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.6e-11 72.8 92 42.4
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.6e-11 72.8 94 43.6
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-11 72.4 88 38.6
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-11 72.4 93 45.2
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 2.1e-11 72.4 85 41.2
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.1e-11 72.4 98 39.8
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 2.1e-11 72.4 62 53.2
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 2.1e-11 72.4 93 41.9
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.7e-11 72.0 87 40.2
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.7e-11 72.0 59 52.5
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 2.7e-11 72.0 93 43.0
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.6e-11 71.2 63 50.8
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.6e-11 71.2 63 50.8
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 6.1e-11 70.9 87 39.1
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.0e-10 70.1 93 41.9
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.0e-10 70.1 95 37.9
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 1.8e-10 69.3 57 52.6
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 2.3e-10 68.9 91 41.8
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-10 68.9 120 33.3
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-10 68.6 93 40.9
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-10 68.6 93 40.9
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 3.0e-10 68.6 77 41.6
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 3.0e-10 68.6 91 33.0
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 3.9e-10 68.2 95 44.2
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.9e-10 68.2 49 53.1
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 3.9e-10 68.2 60 41.7
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 6.7e-10 67.4 91 37.4
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.7e-10 67.4 91 35.2
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 6.7e-10 67.4 78 43.6
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 8.8e-10 67.0 94 38.3
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-09 66.6 99 37.4
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 2.0e-09 65.9 86 41.9
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 2.0e-09 65.9 85 36.5
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.3e-09 65.1 45 60.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 5.7e-09 64.3 87 35.6
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 9.7e-09 63.5 86 39.5
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 9.7e-09 63.5 89 36.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 9.7e-09 63.5 94 37.2
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.3e-08 63.2 50 48.0
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 94 34.0
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 96 39.6
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 96 39.6
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 96 39.6
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 96 39.6
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.7e-08 62.8 46 58.7
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-08 62.8 55 45.5
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.2e-08 62.4 43 60.5
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 3.7e-08 61.6 52 48.1
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.3e-08 60.8 92 34.8
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 8.2e-08 60.5 89 39.3
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 8.2e-08 60.5 95 37.9
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.8e-07 59.3 90 33.3
Aqoxy1G03897 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.4e-07 58.9 63 49.2
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.1e-07 58.2 92 32.6
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 6.9e-07 57.4 48 50.0
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-06 55.8 89 37.1


User provided reference genes

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