Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 0.0e+00 1277.7 631 100.0
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 0.0e+00 1210.3 631 95.1
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.2e-245 852.4 450 95.8
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 9.1e-244 847.0 651 68.4
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 1.0e-234 817.0 649 67.6
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 1.3e-173 614.0 500 63.2
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 9.3e-164 581.3 646 52.3
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 3.5e-163 579.3 654 52.1
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 9.0e-159 564.7 687 47.6
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 1.5e-153 547.4 665 50.2
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 4.3e-153 545.8 653 49.3
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 3.1e-151 539.7 583 52.8
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 7.6e-150 535.0 645 48.8
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 2.2e-149 533.5 645 49.5
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 9.3e-148 528.1 671 47.8
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 1.9e-145 520.4 659 48.3
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 6.2e-144 515.4 639 49.5
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 8.2e-144 515.0 650 47.8
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 1.4e-143 514.2 647 47.8
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 3.8e-141 506.1 681 47.0
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 6.5e-141 505.4 646 46.3
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 1.6e-139 500.7 655 46.9
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 8.7e-138 495.0 646 48.0
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 2.5e-137 493.4 650 46.0
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 4.3e-137 492.7 664 45.3
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 7.4e-137 491.9 657 46.1
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 7.4e-137 491.9 643 46.2
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 1.3e-136 491.1 676 45.4
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 2.2e-136 490.3 695 44.3
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 1.5e-134 484.2 656 46.3
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 2.5e-132 476.9 658 43.0
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 3.2e-132 476.5 689 43.5
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 7.2e-132 475.3 644 45.0
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 2.3e-130 470.3 656 45.0
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 5.3e-127 459.1 660 44.4
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 1.4e-124 451.1 579 47.3
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 2.5e-124 450.3 674 41.8
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 2.7e-123 446.8 668 43.0
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 4.7e-123 446.0 700 42.7
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 6.7e-122 442.2 661 42.2
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 3.3e-121 439.9 655 43.2
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 5.7e-121 439.1 668 41.9
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 2.6e-118 430.3 649 43.8
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 2.6e-118 430.3 675 39.7
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 4.5e-118 429.5 676 41.0
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 1.0e-117 428.3 552 48.0
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 1.0e-117 428.3 626 43.1
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 2.2e-117 427.2 507 47.5
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 3.8e-117 426.4 650 41.8
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 3.8e-117 426.4 633 43.1
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 6.5e-117 425.6 635 44.4
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 1.5e-113 414.5 630 41.9
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 3.3e-113 413.3 630 42.5
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 3.7e-112 409.8 652 40.8
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 3.1e-111 406.8 479 45.9
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 7.7e-110 402.1 659 39.5
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 1.5e-108 397.9 625 41.9
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 1.5e-108 397.9 546 42.5
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 2.5e-108 397.1 681 39.8
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 3.2e-108 396.7 682 38.6
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 2.3e-106 390.6 635 40.9
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 5.2e-106 389.4 541 44.7
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 2.8e-104 383.6 629 41.7
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 8.3e-104 382.1 623 41.1
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 5.3e-103 379.4 474 43.9
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 3.2e-100 370.2 396 51.0
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 4.0e-98 363.2 731 33.9
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 2.5e-92 344.0 666 37.4
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 4.2e-92 343.2 641 41.5
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 4.7e-91 339.7 731 36.1
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 2.3e-90 337.4 540 39.6
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 2.3e-90 337.4 490 44.5
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 1.2e-89 335.1 661 35.6
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 4.4e-89 333.2 660 36.2
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 8.3e-88 328.9 534 40.1
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 7.0e-87 325.9 655 37.9
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 2.7e-86 323.9 539 39.1
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 4.5e-86 323.2 539 39.0
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 1.7e-85 321.2 323 54.8
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 2.5e-76 290.8 378 42.1
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 3.3e-76 290.4 685 33.7
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 3.3e-76 290.4 150 94.7
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 3.6e-75 287.0 661 33.3
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 1.8e-74 284.6 416 43.8
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 7.1e-71 272.7 666 32.3
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 1.5e-68 265.0 314 45.2
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 1.6e-67 261.5 314 43.9
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 6.6e-61 239.6 342 45.9
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 6.6e-61 239.6 362 37.8
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.5e-60 238.4 253 49.4
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 3.1e-58 230.7 356 44.7
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.6e-54 218.4 301 42.9
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 7.8e-54 216.1 200 53.5
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 1.7e-53 214.9 289 40.8
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 1.7e-53 214.9 318 45.0
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 1.3e-51 208.8 262 44.3
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 5.3e-50 203.4 314 38.9
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 3.8e-48 197.2 351 35.6
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 4.6e-46 190.3 235 46.4
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 2.3e-45 188.0 234 46.6
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 3.1e-42 177.6 355 37.5
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 4.5e-41 173.7 351 35.3
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 6.4e-40 169.9 225 49.3
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 5.1e-37 160.2 224 42.0
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 4.3e-36 157.1 377 36.1
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 2.5e-28 131.3 148 55.4
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 1.4e-26 125.6 272 32.4
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 3.1e-26 124.4 441 24.7
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 3.8e-24 117.5 183 49.7
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 2.1e-22 111.7 240 36.7
CSS0020713 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.1e-12 79.3 145 40.0
MCO04G092 Micromonas commoda HOM05D004492 ORTHO05D005602 1.5e-09 68.9 368 26.6
arahy.Tifrunner.gnm1.ann1.12T13Y Arachis hypogaea HOM05D006715 ORTHO05D008345 1.4e-07 62.4 74 41.9
QL02p038810 Quercus lobata HOM05D006715 ORTHO05D008345 3.2e-07 61.2 102 37.3
Sc02g0003960 Simmondsia chinensis HOM05D006715 ORTHO05D008345 4.2e-07 60.8 92 52.2
CiPaw.05G097000 Carya illinoinensis HOM05D006673 ORTHO05D008458 9.4e-07 59.7 305 24.6
MCO09G489 Micromonas commoda HOM05D006715 ORTHO05D008345 3.6e-06 57.8 330 22.4


User provided reference genes

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