Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 5.4e-55 217.6 126 100.0
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 5.9e-54 214.2 126 98.4
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 2.9e-53 211.8 126 97.6
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 5.2e-42 174.5 126 81.0
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 1.9e-28 129.4 100 74.0
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 2.9e-24 115.5 126 62.7
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 4.9e-24 114.8 118 62.7
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 1.0e-21 107.1 116 61.2
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 1.3e-21 106.7 126 59.5
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 1.3e-21 106.7 126 58.7
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 6.6e-21 104.4 126 59.5
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 8.7e-21 104.0 126 59.5
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 8.7e-21 104.0 126 58.7
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 8.7e-21 104.0 126 57.9
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.5e-20 102.4 118 57.6
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.5e-20 102.4 118 57.6
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 2.5e-20 102.4 128 57.0
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 4.3e-20 101.7 111 58.6
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 4.3e-20 101.7 126 52.4
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 5.6e-20 101.3 122 55.7
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 7.3e-20 100.9 122 56.6
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 7.3e-20 100.9 122 57.4
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 1.6e-19 99.8 122 59.8
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 2.8e-19 99.0 123 56.1
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 3.6e-19 98.6 126 56.3
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 4.8e-19 98.2 122 58.2
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 6.2e-19 97.8 122 50.8
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 8.1e-19 97.4 126 56.3
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 1.1e-18 97.1 118 54.2
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 1.1e-18 97.1 126 57.9
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 1.1e-18 97.1 125 52.8
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 1.1e-18 97.1 126 54.0
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 1.4e-18 96.7 126 56.3
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 3.1e-18 95.5 127 55.9
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 4.0e-18 95.1 134 53.7
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 4.0e-18 95.1 126 56.3
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 5.3e-18 94.7 125 53.6
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 9.0e-18 94.0 126 52.4
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 1.2e-17 93.6 108 60.2
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 1.2e-17 93.6 126 53.2
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 1.5e-17 93.2 126 51.6
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 4.4e-17 91.7 121 53.7
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 4.4e-17 91.7 124 55.6
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 9.9e-17 90.5 129 51.9
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 1.7e-16 89.7 122 56.6
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 1.7e-16 89.7 133 52.6
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 2.2e-16 89.4 134 49.3
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 8.4e-16 87.4 112 53.6
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 1.4e-15 86.7 68 76.5
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.9e-15 86.3 127 55.1
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 2.4e-15 85.9 122 52.5
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 2.4e-15 85.9 124 50.0
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 3.2e-15 85.5 128 49.2
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 4.2e-15 85.1 128 56.2
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 4.2e-15 85.1 122 53.3
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.3e-15 84.0 126 51.6
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 9.3e-15 84.0 103 58.3
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.6e-14 83.2 124 58.9
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 3.5e-14 82.0 128 50.8
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 4.6e-14 81.6 126 55.6
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 6.0e-14 81.3 126 50.0
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 6.0e-14 81.3 124 58.1
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 6.0e-14 81.3 124 54.0
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 6.0e-14 81.3 98 52.0
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 7.9e-14 80.9 126 50.0
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 7.9e-14 80.9 124 54.0
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 7.9e-14 80.9 124 50.8
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 1.0e-13 80.5 127 52.0
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.0e-13 80.5 128 52.3
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 1.0e-13 80.5 124 47.6
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 1.3e-13 80.1 126 48.4
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.3e-13 80.1 126 48.4
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 1.3e-13 80.1 120 49.2
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 2.3e-13 79.3 126 47.6
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 2.3e-13 79.3 123 48.8
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 2.3e-13 79.3 127 54.3
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 3.0e-13 79.0 125 54.4
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 3.0e-13 79.0 125 54.4
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 3.0e-13 79.0 131 48.9
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 3.0e-13 79.0 126 48.4
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 3.0e-13 79.0 124 53.2
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 3.9e-13 78.6 126 54.0
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 5.1e-13 78.2 126 52.4
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 5.1e-13 78.2 129 53.5
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 6.6e-13 77.8 126 52.4
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 6.6e-13 77.8 127 53.5
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 8.7e-13 77.4 112 50.0
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 8.7e-13 77.4 128 54.7
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 8.7e-13 77.4 126 47.6
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 1.1e-12 77.0 125 52.0
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 1.9e-12 76.3 127 54.3
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 1.9e-12 76.3 127 54.3
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 2.5e-12 75.9 128 50.8
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 2.5e-12 75.9 130 48.5
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 5.6e-12 74.7 120 51.7
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 7.4e-12 74.3 130 51.5
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 7.4e-12 74.3 130 51.5
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 7.4e-12 74.3 126 50.8
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 9.6e-12 73.9 129 52.7
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 9.6e-12 73.9 125 52.0
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 9.6e-12 73.9 125 52.0
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 9.6e-12 73.9 106 48.1
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 1.8e-10 69.7 68 63.2
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 1.8e-10 69.7 70 64.3
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 2.4e-10 69.3 104 50.0
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 3.1e-10 68.9 130 45.4
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 3.1e-10 68.9 54 72.2
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 9.0e-10 67.4 47 80.9
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 9.0e-10 67.4 47 80.9
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 1.3e-08 63.5 103 48.5
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 1.7e-08 63.2 136 44.9
C04p29800 Brassica napus HOM05D006797 ORTHO05D007696 1.2e-06 57.0 85 48.2
BolC9t58594H Brassica oleracea HOM05D006797 ORTHO05D007696 2.1e-06 56.2 75 52.0
BcaC02g10358 Brassica carinata HOM05D006797 ORTHO05D007696 2.7e-06 55.8 82 48.8


User provided reference genes

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