Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.1e-47 193.0 95 100.0
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 1.7e-24 115.9 105 56.2
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.2e-21 105.5 55 94.5
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.1e-19 99.0 67 74.6
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.7e-19 98.6 67 74.6
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.7e-19 98.6 55 83.6
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.1e-19 97.4 67 74.6
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 1.0e-18 96.7 108 50.9
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.4e-18 96.3 67 73.1
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.3e-18 95.5 55 83.6
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.0e-18 95.1 67 73.1
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 1.2e-17 93.2 67 71.6
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 1.5e-17 92.8 67 71.6
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 3.4e-17 91.7 67 70.1
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.4e-17 91.7 67 70.1
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 4.4e-17 91.3 67 70.1
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 7.5e-17 90.5 67 70.1
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 7.5e-17 90.5 67 70.1
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.5 67 68.7
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.5 67 68.7
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.5 67 68.7
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.5 67 68.7
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.5 67 68.7
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 7.5e-17 90.5 67 68.7
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 9.8e-17 90.1 67 68.7
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 9.8e-17 90.1 67 67.2
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 1.7e-16 89.4 67 68.7
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 2.2e-16 89.0 67 70.1
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 2.2e-16 89.0 67 67.2
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 2.8e-16 88.6 73 61.6
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 2.8e-16 88.6 73 61.6
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 3.7e-16 88.2 67 67.2
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 3.7e-16 88.2 67 67.2
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 3.7e-16 88.2 67 67.2
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 3.7e-16 88.2 67 67.2
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 4.8e-16 87.8 65 69.2
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 4.8e-16 87.8 69 65.2
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 8.3e-16 87.0 67 62.7
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 1.1e-15 86.7 69 66.7
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 1.4e-15 86.3 67 67.2
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 1.8e-15 85.9 67 62.7
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 64.2
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-15 85.5 67 62.7
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 3.1e-15 85.1 62 71.0
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 3.1e-15 85.1 67 62.7
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 7.0e-15 84.0 67 61.2
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 7.0e-15 84.0 67 61.2
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.6e-14 82.8 57 73.7
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 5.9e-14 80.9 67 59.7
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 5.9e-14 80.9 67 59.7
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 7.7e-14 80.5 57 71.9
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 1.0e-13 80.1 67 61.2
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.3e-13 79.7 61 63.9
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 1.3e-13 79.7 67 61.2
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.9e-13 78.6 69 63.8
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 2.9e-13 78.6 69 63.8
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 2.9e-13 78.6 61 60.7
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 2.9e-13 78.6 61 60.7
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 1.5e-12 76.3 67 58.2
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 1.9e-12 75.9 68 58.8
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 1.9e-12 75.9 68 58.8
Hund19833 Selenicereus undatus HOM05D008505 ORTHO05D010735 5.5e-12 74.3 95 48.4
CAN.G452.6 Capsicum annuum HOM05D008505 ORTHO05D010735 7.2e-12 73.9 38 89.5
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 9.5e-12 73.6 66 56.1
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 9.5e-12 73.6 67 56.7
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 9.5e-12 73.6 67 56.7
DCAR_032504 Daucus carota HOM05D008505 ORTHO05D010735 2.8e-11 72.0 38 89.5
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 2.8e-11 72.0 61 54.1
Gorai.009G128900 Gossypium raimondii HOM05D008505 ORTHO05D010735 3.6e-11 71.6 38 86.8
CAN.G2018.8 Capsicum annuum HOM05D008505 ORTHO05D010735 6.1e-11 70.9 38 86.8
CAN.G3365.2 Capsicum annuum HOM05D008505 ORTHO05D010735 6.1e-11 70.9 38 86.8
CAN.G35999.1 Capsicum annuum HOM05D008505 ORTHO05D010735 6.1e-11 70.9 38 86.8
CAN.G89.2 Capsicum annuum HOM05D008505 ORTHO05D010735 6.1e-11 70.9 38 86.8
Migut.D01431 Erythranthe guttata HOM05D008505 ORTHO05D010735 6.1e-11 70.9 38 86.8
Solyc01g067760.1 Solanum lycopersicum HOM05D008505 ORTHO05D010735 6.1e-11 70.9 38 86.8
Solyc09g064400.2 Solanum lycopersicum HOM05D008505 ORTHO05D010735 6.1e-11 70.9 38 86.8
ATCG00630 Arabidopsis thaliana HOM05D008505 ORTHO05D010735 1.4e-10 69.7 38 86.8
CARHR282140 Cardamine hirsuta HOM05D008505 ORTHO05D010735 1.4e-10 69.7 38 86.8
Gohir.A12G229532 Gossypium hirsutum HOM05D008505 ORTHO05D010735 2.3e-10 68.9 38 86.8
Potri.003G067501 Populus trichocarpa HOM05D008505 ORTHO05D010735 2.3e-10 68.9 34 91.2
PGR111G0077 Punica granatum HOM05D008505 ORTHO05D010735 3.0e-10 68.6 38 84.2
arahy.Tifrunner.gnm1.ann1.DJ5Q02 Arachis hypogaea HOM05D008505 ORTHO05D010735 5.2e-10 67.8 37 83.8
Glyma.12G232400 Glycine max HOM05D008505 ORTHO05D010735 5.2e-10 67.8 37 83.8
Glyma.15G126100 Glycine max HOM05D008505 ORTHO05D010735 5.2e-10 67.8 37 83.8
Gorai.005G108800 Gossypium raimondii HOM05D008505 ORTHO05D010735 5.2e-10 67.8 50 68.0
Phvul.002G090522 Phaseolus vulgaris HOM05D008505 ORTHO05D010735 5.2e-10 67.8 37 83.8
Phvul.009G188366 Phaseolus vulgaris HOM05D008505 ORTHO05D010735 5.2e-10 67.8 37 83.8
CAN.G1595.9 Capsicum annuum HOM05D008505 ORTHO05D010735 6.8e-10 67.4 38 81.6
C04p42980 Brassica napus HOM05D008505 ORTHO05D010735 8.8e-10 67.0 38 86.8
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 8.8e-10 67.0 56 60.7
BolC4t25868H Brassica oleracea HOM05D008505 ORTHO05D010735 8.8e-10 67.0 38 86.8
PSO548G0021 Papaver somniferum HOM05D008505 ORTHO05D010735 8.8e-10 67.0 38 81.6
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 1.2e-09 66.6 67 52.2
A06p23140 Brassica napus HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
C02p43560 Brassica napus HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
C06p22980 Brassica napus HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
BolC9t53162H Brassica oleracea HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
BolSC29t60474H Brassica oleracea HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
BolSC29t60595H Brassica oleracea HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
BolSC35t60655H Brassica oleracea HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
BolSC47t61089H Brassica oleracea HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
BraA06t25417Z Brassica rapa HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
BraSC138t45568Z Brassica rapa HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
BraSC25t45858Z Brassica rapa HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
BraSC58t46429Z Brassica rapa HOM05D008505 ORTHO05D010735 1.5e-09 66.2 38 84.2
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.5e-09 66.2 60 60.0
Gohir.D12G108100 Gossypium hirsutum HOM05D008505 ORTHO05D010735 2.0e-09 65.9 38 84.2
CAN.G1739.9 Capsicum annuum HOM05D008505 ORTHO05D010735 2.6e-09 65.5 38 78.9
BraSC103t45474Z Brassica rapa HOM05D008505 ORTHO05D010735 5.7e-09 64.3 37 83.8
Gohir.D06G113625 Gossypium hirsutum HOM05D008505 ORTHO05D010735 5.7e-09 64.3 37 86.5
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 7.5e-09 63.9 60 53.3
BolC2t08913H Brassica oleracea HOM05D008505 ORTHO05D010735 9.8e-09 63.5 38 81.6
LjContig00318g0023250 Lotus japonicus HOM05D008505 ORTHO05D010735 1.3e-08 63.2 37 78.4
Gorai.007G307300 Gossypium raimondii HOM05D008505 ORTHO05D010735 1.7e-08 62.8 38 78.9
BraSC103t45457Z Brassica rapa HOM05D008505 ORTHO05D010735 1.4e-07 59.7 37 78.4
CiPaw.11G114400 Carya illinoinensis HOM05D008505 ORTHO05D010735 1.8e-07 59.3 37 75.7
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 1.6e-06 56.2 47 61.7
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 2.7e-06 55.5 38 71.1


User provided reference genes

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