Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.0e-63 246.5 119 100.0
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 6.7e-31 137.5 69 91.3
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 3.5e-24 115.2 82 72.0
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 5.7e-14 81.3 57 71.9
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 9.7e-14 80.5 50 78.0
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 9.7e-14 80.5 50 78.0
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 9.7e-14 80.5 50 78.0
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 9.7e-14 80.5 50 78.0
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 9.7e-14 80.5 50 78.0
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 1.3e-13 80.1 57 71.9
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.7e-13 79.7 57 70.2
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 1.7e-13 79.7 57 70.2
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 1.7e-13 79.7 57 70.2
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.7e-13 79.7 57 70.2
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.7e-13 79.7 57 70.2
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.7e-13 79.7 50 78.0
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.7e-13 79.7 50 78.0
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.7e-13 79.7 57 70.2
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 2.2e-13 79.3 57 70.2
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 2.2e-13 79.3 57 70.2
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.8e-13 79.0 57 70.2
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 3.7e-13 78.6 57 68.4
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 3.7e-13 78.6 50 76.0
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 3.7e-13 78.6 57 70.2
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 3.7e-13 78.6 57 70.2
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 3.7e-13 78.6 57 70.2
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 3.7e-13 78.6 57 70.2
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 3.7e-13 78.6 57 70.2
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 3.7e-13 78.6 50 76.0
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 3.7e-13 78.6 57 68.4
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.7e-13 78.6 46 82.6
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 3.7e-13 78.6 50 76.0
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 4.8e-13 78.2 57 68.4
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 4.8e-13 78.2 57 68.4
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 4.8e-13 78.2 57 68.4
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 4.8e-13 78.2 57 68.4
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 4.8e-13 78.2 57 68.4
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 4.8e-13 78.2 57 68.4
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 4.8e-13 78.2 57 68.4
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 4.8e-13 78.2 57 68.4
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 4.8e-13 78.2 50 76.0
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 4.8e-13 78.2 57 68.4
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 6.3e-13 77.8 83 54.2
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 6.3e-13 77.8 57 68.4
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 8.2e-13 77.4 57 68.4
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 8.2e-13 77.4 57 68.4
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 8.2e-13 77.4 57 68.4
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 8.2e-13 77.4 57 68.4
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 8.2e-13 77.4 57 68.4
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 8.2e-13 77.4 57 68.4
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 8.2e-13 77.4 50 74.0
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 8.2e-13 77.4 50 74.0
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 8.2e-13 77.4 50 74.0
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 8.2e-13 77.4 57 68.4
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.1e-12 77.0 50 74.0
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 1.1e-12 77.0 57 68.4
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-12 77.0 46 80.4
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 1.1e-12 77.0 50 74.0
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.1e-12 77.0 57 68.4
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 1.1e-12 77.0 50 74.0
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 1.1e-12 77.0 50 74.0
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 1.1e-12 77.0 50 74.0
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 1.1e-12 77.0 50 74.0
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 1.4e-12 76.6 50 74.0
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 1.4e-12 76.6 50 74.0
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 1.4e-12 76.6 57 66.7
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 1.8e-12 76.3 57 66.7
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 1.8e-12 76.3 50 74.0
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 2.4e-12 75.9 50 74.0
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.4e-12 75.9 50 74.0
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.4e-12 75.9 50 74.0
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.4e-12 75.9 50 74.0
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 2.4e-12 75.9 50 72.0
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 3.1e-12 75.5 57 64.9
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 3.1e-12 75.5 50 72.0
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 3.1e-12 75.5 58 69.0
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 3.1e-12 75.5 48 75.0
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 4.1e-12 75.1 57 63.2
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 5.3e-12 74.7 50 72.0
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 6.9e-12 74.3 57 63.2
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 6.9e-12 74.3 50 72.0
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 6.9e-12 74.3 50 72.0
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 6.9e-12 74.3 50 72.0
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 6.9e-12 74.3 57 64.9
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 1.5e-11 73.2 48 72.9
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 1.7e-10 69.7 47 70.2
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 2.2e-10 69.3 50 70.0
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 2.9e-10 68.9 47 70.2
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 3.8e-10 68.6 50 64.0
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 3.8e-10 68.6 50 64.0
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 7.2e-09 64.3 46 67.4
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.6e-08 62.0 44 63.6
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 3.6e-08 62.0 39 79.5
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 7.9e-08 60.8 50 62.0


User provided reference genes

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