Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 5.0e-104 381.3 225 100.0
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.5e-87 325.9 226 86.3
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.5e-84 314.3 225 86.7
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.3e-54 217.2 278 54.3
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 2.1e-49 199.9 130 75.4
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 9.6e-47 191.0 239 46.9
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.1e-45 186.0 238 53.8
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.3e-45 185.3 123 75.6
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.3e-45 185.3 123 75.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 9.0e-45 184.5 129 73.6
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.0e-44 183.3 126 73.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 4.2e-42 175.6 312 46.2
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.6e-41 173.7 126 66.7
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 7.9e-41 171.4 185 55.1
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.3e-40 170.6 222 50.5
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 6.7e-40 168.3 133 65.4
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 1.9e-39 166.8 271 50.2
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 9.6e-39 164.5 238 47.5
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.6e-38 163.7 131 66.4
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 6.3e-38 161.8 109 72.5
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.2e-38 161.4 238 47.9
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.8e-37 160.2 223 51.6
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.8e-37 160.2 214 46.3
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.5e-36 157.1 129 59.7
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.6e-36 156.4 102 71.6
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.6e-36 156.4 137 58.4
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 5.9e-36 155.2 124 66.9
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 7.6e-36 154.8 115 65.2
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 7.6e-36 154.8 131 58.0
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 1.0e-35 154.5 151 64.2
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.7e-35 153.7 129 62.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 3.8e-35 152.5 234 50.9
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.0e-35 152.1 130 62.3
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.1e-34 151.0 230 43.0
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.1e-34 151.0 130 64.6
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.4e-34 150.6 128 61.7
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.9e-34 150.2 223 43.5
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 5.5e-34 148.7 234 49.1
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 7.2e-34 148.3 247 43.3
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 2.1e-33 146.7 112 63.4
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.7e-33 146.4 114 62.3
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.7e-33 146.4 114 62.3
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.7e-33 146.4 127 63.0
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 2.7e-33 146.4 93 75.3
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 3.5e-33 146.0 114 64.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 6.1e-33 145.2 124 58.1
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 6.1e-33 145.2 124 58.1
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 6.1e-33 145.2 124 58.1
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 7.9e-33 144.8 110 64.5
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.9e-33 144.8 187 43.9
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.0e-32 144.4 234 46.6
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.0e-32 144.4 252 42.5
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 3.9e-32 142.5 195 52.3
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 5.1e-32 142.1 223 53.8
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 5.1e-32 142.1 125 58.4
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 6.7e-32 141.7 112 62.5
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.1e-31 141.0 96 74.0
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 2.5e-31 139.8 127 59.1
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 3.3e-31 139.4 116 59.5
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 3.3e-31 139.4 116 59.5
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 7.4e-31 138.3 88 72.7
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 1.3e-30 137.5 90 71.1
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.6e-30 137.1 225 46.2
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 2.2e-30 136.7 110 64.5
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.2e-30 136.7 83 75.9
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.8e-30 136.3 213 46.9
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 3.7e-30 136.0 221 47.5
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 4.8e-30 135.6 91 72.5
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.8e-30 135.6 97 72.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 4.8e-30 135.6 89 75.3
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 4.8e-30 135.6 225 40.4
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 4.8e-30 135.6 225 40.4
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.1e-29 134.4 236 51.3
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.1e-29 134.4 221 45.2
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.1e-29 134.4 98 71.4
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 2.4e-29 133.3 205 47.3
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.1e-29 132.9 102 66.7
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.3e-29 132.1 101 70.3
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.5e-28 130.6 89 71.9
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 2.0e-28 130.2 119 61.3
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 2.6e-28 129.8 213 51.6
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 3.4e-28 129.4 138 52.2
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.4e-28 129.4 131 57.3
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 4.5e-28 129.0 207 48.8
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 5.9e-28 128.6 208 44.7
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 7.7e-28 128.3 223 48.4
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.7e-27 127.1 204 45.1
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.7e-27 127.1 91 68.1
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.9e-27 126.3 81 79.0
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.4e-26 124.0 227 46.7
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.4e-26 124.0 227 39.2
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 3.2e-26 122.9 84 70.2
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 1.0e-24 117.9 228 41.7
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.4e-24 117.5 99 64.6
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.8e-24 117.1 222 43.2
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 3.9e-24 115.9 84 67.9
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.7e-24 115.2 117 56.4
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 2.5e-23 113.2 80 71.2
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 3.3e-23 112.8 95 58.9
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 5.7e-23 112.1 107 54.2
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 7.4e-23 111.7 92 63.0
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.7e-22 110.5 92 62.0
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.8e-22 109.8 206 40.8
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 6.3e-22 108.6 78 71.8
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.1e-21 107.8 81 72.8
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.2e-20 104.4 84 64.3
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.2e-20 104.4 93 55.9
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.5e-20 104.0 62 77.4
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 2.0e-20 103.6 67 74.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.6e-20 103.2 72 75.0
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 2.6e-20 103.2 140 41.4
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.8e-19 99.4 102 56.9
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.8e-19 99.4 102 56.9
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.8e-19 99.4 144 41.0
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.1e-18 97.8 113 49.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 1.4e-18 97.4 60 76.7
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.9e-18 97.1 68 76.5
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.5e-18 96.7 131 47.3
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 7.2e-18 95.1 111 44.1
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.6e-17 92.8 85 50.6
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 7.9e-17 91.7 223 39.0
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.0e-16 91.3 93 50.5
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.0e-16 91.3 70 68.6
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.0e-16 91.3 191 35.6
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.0e-16 89.7 76 63.2
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 3.0e-16 89.7 132 55.3
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 5.1e-16 89.0 79 58.2
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 6.7e-16 88.6 67 67.2
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 6.7e-16 88.6 90 57.8
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.1e-15 87.8 65 73.8
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.5e-15 87.4 67 73.1
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 7.4e-15 85.1 75 64.0
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.3e-14 84.3 76 50.0
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.3e-14 84.3 127 42.5
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 4.8e-14 82.4 114 43.9
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.1e-13 81.3 90 46.7
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.4e-13 80.9 165 38.2
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 4.1e-13 79.3 122 45.1
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.3e-13 79.0 49 81.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 2.6e-12 76.6 111 43.2
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 3.5e-12 76.3 99 47.5
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 4.5e-12 75.9 123 37.4
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 4.5e-12 75.9 113 43.4
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 5.9e-12 75.5 54 74.1
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 7.7e-12 75.1 54 74.1
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 2.2e-11 73.6 186 36.0
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 5.0e-11 72.4 61 63.9
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 8.5e-11 71.6 62 58.1
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.5e-10 70.9 50 76.0
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.9e-10 70.5 78 48.7
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.9e-10 70.5 98 40.8
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 3.2e-10 69.7 121 41.3
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 4.2e-10 69.3 45 77.8
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 9.4e-10 68.2 42 81.0
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 9.4e-10 68.2 61 57.4
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 9.4e-10 68.2 48 68.8
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.6e-09 67.4 72 45.8
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.6e-09 66.2 49 73.5
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.0e-08 64.7 44 75.0
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 2.3e-08 63.5 47 72.3
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 4.0e-08 62.8 49 65.3
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 4.0e-08 62.8 62 51.6
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 6.7e-08 62.0 94 39.4
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 8.8e-08 61.6 42 71.4
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 1.1e-07 61.2 49 65.3
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 1.1e-07 61.2 50 60.0
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 3.3e-07 59.7 68 55.9
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.3e-07 59.7 36 80.6
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 4.4e-07 59.3 48 60.4
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 5.7e-07 58.9 62 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 9.7e-07 58.2 76 36.8
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 2.2e-06 57.0 87 36.8
Manes.15G034200 Manihot esculenta HOM05D002369 ORTHO05D002435 3.7e-06 56.2 77 36.4
Mapoly0073s0064 Marchantia polymorpha HOM05D002369 ORTHO05D002435 4.8e-06 55.8 96 35.4


User provided reference genes

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