Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 1.9e-278 961.8 474 100.0
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 1.2e-261 906.0 445 100.0
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 4.8e-213 744.6 449 82.2
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 4.5e-203 711.4 442 81.7
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 1.0e-178 630.6 323 97.5
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 1.4e-172 610.1 448 66.5
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 3.5e-163 578.9 435 66.4
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 5.9e-163 578.2 433 64.2
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 1.0e-162 577.4 449 61.7
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 1.1e-161 573.9 450 62.7
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 1.9e-161 573.2 442 65.2
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 1.0e-159 567.4 445 62.9
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 1.3e-157 560.5 451 64.1
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 7.7e-155 551.2 449 59.7
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 1.3e-154 550.4 448 60.3
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 2.7e-152 542.7 450 59.1
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 8.0e-152 541.2 449 64.6
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 2.0e-147 526.6 458 57.2
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 1.7e-146 523.5 448 58.3
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 6.5e-146 521.5 452 57.7
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 1.5e-145 520.4 446 60.5
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 1.3e-141 507.3 445 56.9
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 1.4e-140 503.8 453 56.3
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 8.6e-138 494.6 484 53.1
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 1.1e-137 494.2 451 54.3
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 1.2e-136 490.7 447 55.0
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 1.6e-136 490.3 452 54.6
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 1.4e-135 487.3 450 54.7
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 1.8e-135 486.9 449 54.8
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 1.8e-135 486.9 449 54.8
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 8.9e-135 484.6 432 56.7
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 8.9e-135 484.6 450 54.4
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 1.2e-134 484.2 438 57.3
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 3.4e-134 482.6 451 54.8
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 7.5e-134 481.5 481 52.0
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 1.3e-133 480.7 445 54.8
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 2.2e-133 479.9 445 54.2
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 4.9e-133 478.8 445 54.8
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 2.4e-132 476.5 451 51.9
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 7.0e-132 474.9 446 53.6
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 1.6e-131 473.8 457 53.0
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 4.6e-131 472.2 451 53.7
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 7.8e-131 471.5 454 53.3
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 3.0e-130 469.5 458 52.6
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 2.3e-127 459.9 453 54.3
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 2.3e-127 459.9 458 51.5
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 1.2e-126 457.6 448 54.7
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 2.0e-126 456.8 449 54.3
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 2.0e-126 456.8 450 53.6
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 2.0e-126 456.8 445 52.4
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 2.4e-124 449.9 321 69.2
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 9.2e-124 448.0 406 56.2
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 3.5e-123 446.0 451 51.4
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 7.8e-123 444.9 449 53.9
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 7.8e-123 444.9 451 52.8
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 2.3e-122 443.4 449 54.1
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 5.6e-121 438.7 449 52.8
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 1.6e-120 437.2 450 52.0
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 1.6e-120 437.2 448 52.5
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 3.6e-120 436.0 449 53.5
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 3.2e-116 422.9 452 50.7
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.3e-106 391.0 449 48.6
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 9.6e-105 384.8 401 48.9
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 2.2e-101 373.6 458 43.9
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 1.4e-100 370.9 438 45.2
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 5.6e-97 359.0 284 63.0
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 3.4e-94 349.7 473 42.5
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 9.9e-94 348.2 446 42.8
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 6.0e-91 339.0 447 41.6
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 1.5e-89 334.3 451 40.1
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 1.5e-89 334.3 451 40.1
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 9.6e-89 331.6 443 40.6
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 1.3e-88 331.3 504 41.9
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.4e-87 327.8 314 54.5
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 1.7e-85 320.9 223 73.5
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 3.4e-78 296.6 450 38.2
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 1.3e-77 294.7 499 36.9
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 1.1e-76 291.6 448 40.2
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 6.0e-75 285.8 292 48.3
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 5.1e-74 282.7 441 40.8
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.3e-72 278.1 193 69.9
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 6.3e-72 275.8 450 38.7
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 4.1e-71 273.1 452 38.1
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 5.3e-71 272.7 272 50.7
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 2.0e-70 270.8 451 38.6
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 6.5e-69 265.8 448 39.1
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 2.5e-65 253.8 295 48.8
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 4.3e-65 253.1 447 37.4
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 2.4e-63 247.3 449 35.9
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 2.0e-62 244.2 405 41.2
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 2.0e-54 217.6 223 53.4
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 1.7e-48 198.0 436 34.2
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 4.8e-48 196.4 311 40.2
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 1.5e-44 184.9 250 42.8
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 9.4e-44 182.2 295 39.0
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 5.7e-41 172.9 178 47.2
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 1.6e-35 154.8 322 31.1
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 1.0e-29 135.6 403 24.6
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 3.6e-27 127.1 465 23.4
Pp3c2_16400 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.6e-25 120.9 494 23.3
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.4e-25 120.6 507 22.9
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 2.8e-24 117.5 133 46.6
Pp3c22_1680 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.3e-24 116.3 298 27.5
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.1e-23 114.0 441 24.0
Pp3c18_21550 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.1e-23 113.6 389 23.4
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.4e-23 113.2 283 25.8
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 2.0e-22 111.3 441 21.5
Pp3c10_4240 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.5e-22 110.5 355 23.7
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.0e-21 109.0 290 24.1
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.3e-20 103.6 301 24.3
SalBow8G2706 Salvia bowleyana HOM05D000076 ORTHO05D013329 6.1e-19 99.8 87 54.0
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 8.0e-19 99.4 303 26.4
unitig_699.g19307 Utricularia gibba HOM05D006588 ORTHO05D008272 8.0e-19 99.4 123 48.0
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.2e-15 87.4 66 62.1
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.1e-15 87.0 65 61.5
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.7e-14 84.3 66 60.6
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.7e-14 84.3 66 60.6
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.6e-13 79.3 57 64.9
unitig_699.g19308 Utricularia gibba HOM05D006588 ORTHO05D008272 1.5e-12 78.6 141 34.8
Glyma.05G223602 Glycine max HOM05D006588 ORTHO05D008272 5.2e-10 70.1 99 39.4
Lsat_1_v5_gn_7_38261 Lactuca sativa HOM05D006588 ORTHO05D008272 1.2e-09 68.9 122 35.2
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.5e-09 68.6 56 55.4
Pp3s358_10 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.4e-09 67.4 183 25.1
Haze_18080 Corylus avellana HOM05D006588 ORTHO05D008272 1.7e-08 65.1 36 69.4


User provided reference genes

Program Settings