Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 3.1e-227 791.6 435 100.0
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.6e-223 779.2 435 97.9
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.4e-211 739.6 414 94.9
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 1.1e-168 597.0 411 76.4
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 3.3e-168 595.5 414 77.3
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.9e-152 543.1 382 76.2
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 2.6e-125 453.0 413 59.6
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 5.1e-121 438.7 418 58.6
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 4.8e-119 432.2 392 61.7
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.4e-117 426.0 406 58.4
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.4e-113 414.1 412 56.1
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 2.0e-112 410.2 414 55.1
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.4e-110 404.1 383 60.8
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 6.9e-110 401.7 409 54.8
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.6e-109 399.8 410 54.6
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 7.7e-109 398.3 410 53.7
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 8.5e-108 394.8 405 54.3
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 6.1e-106 388.7 407 53.8
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 6.7e-105 385.2 406 53.0
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 8.8e-105 384.8 470 48.7
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 2.6e-104 383.3 536 45.7
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 2.8e-103 379.8 413 53.5
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 4.8e-103 379.0 404 55.2
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 5.3e-102 375.6 481 47.8
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.5e-101 374.0 398 53.0
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.0e-101 373.6 382 56.5
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 2.6e-101 373.2 465 49.5
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 1.3e-100 370.9 382 54.7
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 1.7e-100 370.5 468 49.1
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 1.7e-100 370.5 401 54.6
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 2.2e-100 370.2 401 54.9
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 3.8e-100 369.4 401 54.6
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 4.2e-99 365.9 386 55.2
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 1.6e-98 364.0 410 51.2
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 2.1e-98 363.6 399 52.6
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 2.7e-98 363.2 413 53.5
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.0e-97 361.3 394 52.5
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 3.0e-97 359.8 443 49.9
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 6.7e-97 358.6 415 50.8
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 6.7e-97 358.6 394 53.0
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.5e-96 357.5 405 54.6
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.8e-94 350.5 415 50.8
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 4.1e-94 349.4 407 50.6
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 5.3e-94 349.0 439 48.7
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 3.5e-93 346.3 390 51.5
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.0e-92 344.7 403 51.9
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 2.9e-92 343.2 398 52.0
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 7.2e-91 338.6 424 49.1
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.2e-90 337.8 433 48.3
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.6e-90 337.4 400 51.0
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 2.7e-90 336.7 395 50.6
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 3.6e-90 336.3 432 48.6
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.0e-89 334.7 430 48.1
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 2.3e-89 333.6 379 49.3
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 5.2e-89 332.4 433 46.2
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 6.8e-89 332.0 398 49.0
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 2.6e-88 330.1 422 48.6
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 3.4e-88 329.7 415 46.7
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 4.4e-88 329.3 396 50.0
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 1.7e-87 327.4 449 44.8
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 2.4e-86 323.6 399 49.4
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 2.0e-85 320.5 417 47.0
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 5.9e-85 318.9 453 45.9
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.0e-84 318.2 415 46.7
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 6.5e-84 315.5 406 49.3
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 1.2e-82 311.2 405 47.4
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 8.0e-82 308.5 414 44.0
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 4.0e-81 306.2 400 46.2
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 3.4e-80 303.1 406 44.8
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 2.2e-79 300.4 408 44.6
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 3.7e-79 299.7 405 44.2
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 8.3e-79 298.5 409 45.5
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.2e-77 294.7 411 44.0
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.2e-77 294.7 411 44.0
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 2.7e-77 293.5 409 43.3
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 2.7e-77 293.5 409 43.3
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 3.5e-77 293.1 407 44.0
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 3.5e-77 293.1 352 52.0
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 5.9e-77 292.4 477 41.3
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 1.3e-76 291.2 409 43.0
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 1.1e-75 288.1 418 42.8
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 4.2e-75 286.2 389 48.1
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 6.8e-73 278.9 408 43.4
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 9.8e-72 275.0 414 42.8
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 2.9e-71 273.5 337 47.5
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 2.4e-70 270.4 408 42.4
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 9.2e-70 268.5 419 42.2
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 1.6e-69 267.7 418 43.1
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 5.9e-69 265.8 411 44.0
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 5.6e-67 259.2 339 46.9
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 2.6e-64 250.4 407 42.5
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.9e-63 246.9 218 61.0
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 2.4e-62 243.8 417 42.7
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 6.2e-58 229.2 190 64.7
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 1.2e-50 204.9 496 32.9
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 2.0e-48 197.6 261 49.0
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.6e-48 197.2 202 52.0
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 1.1e-30 138.7 121 59.5
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 2.4e-30 137.5 250 40.8
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 5.4e-30 136.3 171 48.5
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 7.1e-30 136.0 460 30.4
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 7.1e-30 136.0 460 30.4
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 1.0e-28 132.1 202 41.1
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 6.6e-28 129.4 118 58.5
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.7e-23 114.8 135 50.4
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 2.9e-23 114.0 83 62.7
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 2.4e-22 110.9 515 26.4
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 4.6e-21 106.7 123 50.4
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 1.1e-19 102.1 68 69.1
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 5.3e-17 93.2 122 46.7
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.0e-16 91.3 226 31.4
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 4.5e-16 90.1 72 61.1
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 7.6e-16 89.4 364 27.5
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 3.5e-13 80.5 78 53.8
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 4.3e-11 73.6 203 31.5
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 1.6e-10 71.6 104 46.2
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 4.8e-10 70.1 86 48.8
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.0e-08 64.7 274 28.8
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 3.4e-08 63.9 66 56.1
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.5e-08 63.5 215 30.2
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 6.5e-07 59.7 110 39.1
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 8.4e-07 59.3 68 51.5
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.1e-06 58.9 332 28.0
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 5.5e-06 56.6 258 28.3
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 9.3e-06 55.8 46 63.0


User provided reference genes

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