Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 4.6e-183 644.4 323 100.0
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 6.6e-182 640.6 323 99.1
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.7e-174 615.9 325 95.4
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 3.3e-165 585.1 323 89.2
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 9.6e-165 583.6 323 88.9
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 1.1e-133 480.3 323 75.5
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 4.3e-133 478.4 327 75.8
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 9.0e-131 470.7 327 74.9
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 2.0e-130 469.5 322 73.6
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 2.0e-130 469.5 326 73.0
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.7e-129 466.5 331 72.8
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.2e-129 466.1 328 74.7
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 2.9e-129 465.7 326 73.0
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 1.1e-128 463.8 326 73.0
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.9e-128 463.0 324 72.5
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 7.2e-128 461.1 328 72.3
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 7.2e-128 461.1 328 72.3
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 9.3e-128 460.7 327 72.5
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.2e-127 460.3 326 72.1
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 2.7e-127 459.1 332 72.0
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 6.1e-127 458.0 330 72.1
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 6.1e-127 458.0 329 72.6
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 2.3e-126 456.1 328 71.6
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 3.9e-126 455.3 338 71.3
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 6.7e-126 454.5 325 73.2
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 8.7e-126 454.1 328 71.3
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 2.5e-125 452.6 326 71.8
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 1.3e-124 450.3 338 70.7
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 1.6e-124 449.9 326 71.2
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 4.8e-124 448.4 326 70.9
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 6.3e-124 448.0 326 70.9
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.1e-123 447.2 339 70.2
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.4e-123 446.8 321 69.5
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 1.8e-123 446.4 328 70.7
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.8e-123 446.4 324 71.6
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 1.8e-123 446.4 326 71.2
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 2.4e-123 446.0 331 70.1
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 1.2e-122 443.7 329 69.9
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.5e-122 443.4 326 71.5
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 2.6e-122 442.6 326 71.2
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 2.6e-122 442.6 328 68.9
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 2.6e-122 442.6 325 69.8
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 2.6e-122 442.6 331 68.3
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 3.4e-122 442.2 324 71.0
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 3.4e-122 442.2 331 70.4
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 5.9e-122 441.4 326 70.6
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 5.9e-122 441.4 327 69.4
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.0e-121 440.7 330 70.9
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.7e-121 439.9 330 71.5
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 1.7e-121 439.9 326 68.7
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 2.9e-121 439.1 332 68.1
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.8e-121 438.7 326 70.9
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.8e-121 438.7 326 70.6
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 3.8e-121 438.7 324 70.4
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 1.1e-120 437.2 327 70.3
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.1e-120 437.2 326 70.6
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 1.1e-120 437.2 327 69.4
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 1.4e-120 436.8 325 68.3
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 1.9e-120 436.4 325 68.3
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 2.5e-120 436.0 329 69.9
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 3.2e-120 435.6 328 68.3
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 5.5e-120 434.9 324 68.8
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 7.2e-120 434.5 324 68.8
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 7.2e-120 434.5 326 68.4
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 9.4e-120 434.1 327 70.0
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 9.4e-120 434.1 332 69.0
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 1.6e-119 433.3 322 68.9
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 1.6e-119 433.3 327 69.4
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 2.7e-119 432.6 325 67.7
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 4.6e-119 431.8 324 68.8
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.0e-118 430.6 287 76.3
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.0e-118 430.6 324 68.5
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 1.0e-118 430.6 331 67.4
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.8e-118 429.9 325 67.4
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 3.0e-118 429.1 324 68.5
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 3.0e-118 429.1 330 68.5
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 5.1e-118 428.3 324 68.5
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 5.1e-118 428.3 351 67.0
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 1.5e-117 426.8 325 67.1
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 2.0e-117 426.4 333 67.3
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 2.0e-117 426.4 338 66.0
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 3.3e-117 425.6 325 67.4
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 3.3e-117 425.6 331 66.8
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 4.4e-117 425.2 327 68.5
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 4.4e-117 425.2 325 68.0
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 4.4e-117 425.2 326 68.4
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 9.7e-117 424.1 330 67.9
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 9.7e-117 424.1 330 67.3
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.7e-116 422.2 328 67.7
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 6.3e-116 421.4 326 66.6
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 6.3e-116 421.4 322 66.8
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 2.4e-115 419.5 325 66.8
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 2.4e-115 419.5 324 65.4
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 2.0e-114 416.4 362 61.3
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 3.8e-113 412.1 351 65.5
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 6.5e-113 411.4 322 67.7
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.5e-112 409.5 317 67.2
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 2.1e-111 406.4 329 65.3
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 2.3e-110 402.9 331 63.4
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 4.5e-106 388.7 385 55.3
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 5.0e-105 385.2 264 70.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.1e-104 384.0 295 69.5
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 2.5e-104 382.9 263 68.8
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 3.2e-104 382.5 263 71.1
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 8.0e-103 377.9 505 45.5
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.4e-102 377.1 317 65.6
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 2.6e-101 372.9 327 64.5
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.7e-87 325.5 192 83.9
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.8e-84 316.2 197 78.7
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 2.5e-80 303.1 259 54.8
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 4.3e-80 302.4 182 81.9
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 2.8e-79 299.7 263 54.8
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.8e-78 297.0 175 82.9
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 2.0e-77 293.5 167 86.8
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 4.1e-75 285.8 175 80.6
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 1.3e-73 280.8 167 81.4
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.2e-69 267.7 207 65.7
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 4.4e-53 212.6 124 85.5
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.9e-49 199.5 119 83.2
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.2e-47 194.5 119 80.7
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.1e-46 191.4 188 53.2
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.4e-46 191.0 121 77.7
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.7e-44 184.1 143 58.7
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.2e-43 179.5 113 77.9
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 6.6e-41 172.2 190 51.1
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.5e-37 161.0 119 71.4
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.2e-34 151.4 95 82.1
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.4e-27 127.9 153 47.1
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 5.8e-21 105.9 73 72.6
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 5.3e-14 82.8 129 42.6
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 2.5e-11 73.9 155 32.3
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 3.2e-11 73.6 49 67.3
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 4.2e-11 73.2 177 28.8
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.6e-10 70.1 159 32.1
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.1e-08 65.1 158 33.5
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 4.3e-08 63.2 180 30.6
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 8.2e-07 58.9 176 27.8
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.4e-06 58.2 49 61.2
MCO17G075 Micromonas commoda HOM05D051517 ORTHO05D006483 5.3e-06 56.2 179 24.6


User provided reference genes

Program Settings