Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 4.4e-194 681.0 323 100.0
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.6e-191 671.0 323 99.1
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.7e-188 661.0 323 97.5
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 3.0e-174 615.1 323 89.2
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 2.1e-172 609.0 322 87.6
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 2.3e-166 589.0 315 86.7
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 5.8e-162 574.3 322 82.6
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 5.4e-160 567.8 317 83.3
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 2.7e-159 565.5 323 80.5
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 1.0e-158 563.5 323 80.5
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 3.0e-158 562.0 317 82.3
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 3.3e-157 558.5 314 81.5
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 5.6e-157 557.8 314 81.5
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.3e-156 556.6 322 80.4
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 1.3e-156 556.6 322 79.8
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.6e-156 556.2 323 79.9
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.6e-156 555.1 323 79.6
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 4.8e-156 554.7 319 79.3
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.4e-155 553.1 323 81.1
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.4e-155 553.1 323 79.9
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.4e-155 553.1 323 79.9
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 5.3e-155 551.2 315 81.3
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 9.0e-155 550.4 321 78.5
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.5e-154 549.7 319 78.4
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 3.4e-154 548.5 315 81.3
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.7e-153 546.2 312 82.1
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 3.8e-153 545.0 313 80.5
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.4e-152 542.3 321 78.2
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.4e-152 542.3 321 78.2
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 3.2e-152 542.0 308 81.2
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 7.1e-152 540.8 317 77.6
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 1.6e-151 539.7 318 78.6
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.6e-151 539.7 323 78.3
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.1e-151 539.3 320 77.5
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 2.7e-151 538.9 318 79.2
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 7.9e-151 537.3 314 78.7
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.3e-150 536.6 320 78.1
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 1.3e-150 536.6 314 78.0
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 1.3e-150 536.6 323 76.5
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 2.3e-150 535.8 320 76.2
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.0e-150 535.4 328 76.8
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 3.0e-150 535.4 313 78.3
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 3.0e-150 535.4 315 78.4
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 8.7e-150 533.9 320 75.6
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 8.7e-150 533.9 314 78.3
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.5e-149 533.1 321 77.9
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 2.5e-149 532.3 315 77.5
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 7.4e-149 530.8 315 78.4
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.3e-148 530.0 309 79.9
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.6e-148 529.6 307 80.1
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 1.6e-148 529.6 323 76.2
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 6.2e-148 527.7 315 78.7
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 2.4e-147 525.8 309 77.0
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 2.4e-147 525.8 317 78.2
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 5.3e-147 524.6 316 77.2
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 5.3e-147 524.6 323 76.5
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 5.3e-147 524.6 309 76.4
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 6.9e-147 524.2 317 75.4
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 9.0e-147 523.9 320 75.9
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 2.0e-146 522.7 313 77.6
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 2.0e-146 522.7 323 73.4
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 2.0e-146 522.7 322 77.0
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.0e-146 522.7 306 78.4
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 5.8e-146 521.2 310 78.1
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 7.6e-146 520.8 317 76.7
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.7e-145 519.6 315 76.8
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.2e-145 519.2 322 76.4
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 2.2e-145 519.2 309 76.7
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 2.9e-145 518.8 309 76.4
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 3.8e-145 518.5 309 78.6
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 8.4e-145 517.3 310 77.1
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 8.4e-145 517.3 317 75.1
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 8.4e-145 517.3 318 76.4
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 2.4e-144 515.8 322 74.5
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 7.1e-144 514.2 310 77.1
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 9.3e-144 513.8 308 76.6
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.6e-143 513.1 309 75.7
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.1e-143 512.7 308 76.9
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 2.7e-143 512.3 308 76.6
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.7e-143 512.3 310 77.1
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 4.6e-143 511.5 311 75.2
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 6.0e-143 511.1 310 76.8
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 6.0e-143 511.1 321 73.5
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 7.9e-143 510.8 310 76.5
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 7.9e-143 510.8 314 75.5
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.3e-142 510.0 308 76.0
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 3.0e-142 508.8 320 73.4
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 5.1e-142 508.1 317 74.4
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 6.7e-142 507.7 318 75.2
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.5e-141 506.5 309 76.4
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.6e-140 503.1 312 74.0
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 3.7e-140 501.9 307 76.5
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.4e-139 500.0 314 73.9
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.4e-139 499.2 311 74.3
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 4.0e-139 498.4 311 73.0
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.4e-138 495.4 310 72.9
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 3.5e-135 485.3 328 71.0
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 3.9e-134 481.9 315 72.7
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 5.7e-133 478.0 312 69.6
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 6.9e-131 471.1 305 71.1
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.2e-130 470.3 305 71.8
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 6.3e-124 448.0 314 67.5
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.4e-123 446.0 314 66.9
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 4.1e-123 445.3 311 68.8
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 1.4e-120 436.8 307 64.8
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 1.2e-119 433.7 313 63.6
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.2e-119 433.7 310 67.1
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 2.1e-119 433.0 315 66.0
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.9e-119 431.0 452 52.2
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 8.8e-118 427.6 307 67.1
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.0e-117 426.4 305 63.9
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 4.4e-117 425.2 274 71.2
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.7e-116 423.3 339 62.5
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.7e-116 423.3 339 62.5
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 4.8e-116 421.8 241 78.0
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 2.2e-113 412.9 287 64.8
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 9.4e-112 407.5 310 61.0
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 3.9e-110 402.1 305 59.7
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.2e-105 386.3 314 58.0
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 2.4e-99 366.3 213 78.9
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 5.7e-93 345.1 252 66.3
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 1.3e-92 344.0 212 74.5
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 6.3e-92 341.7 199 78.9
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.1e-91 339.3 215 71.6
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 7.8e-82 308.1 176 80.1
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 2.9e-81 306.2 187 78.1
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 2.1e-79 300.1 177 77.4
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 3.6e-79 299.3 305 48.2
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 8.3e-68 261.5 308 48.7
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 6.6e-49 198.7 209 47.4
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 5.1e-41 172.6 107 69.2
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.3e-40 169.5 99 78.8
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 2.1e-34 150.6 88 76.1
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-33 147.9 96 69.8
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.5e-32 144.4 81 77.8
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.1e-27 128.3 73 80.8
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.2e-27 126.7 89 67.4
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.7e-26 123.6 79 74.7
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 3.7e-23 113.2 321 28.3
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 1.5e-21 107.8 318 26.4
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 1.2e-18 98.2 65 75.4
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 3.4e-13 80.1 179 30.2
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 6.5e-12 75.9 303 25.4
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.4e-09 68.2 49 67.3
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.3e-09 67.4 41 68.3
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 7.4e-08 62.4 48 60.4
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.4e-06 57.4 43 69.8


User provided reference genes

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